Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04319 ATGGGTTTGTTCGGCAGTTTCTTGGGGATCATTGGTTTTGTGTTTGGAATCCCTCTTGGCCTATTGGTAGGGTTCTTTGTGTTTGTTTACTCAGAAACCAAACAAGTGAAGGAACCTGTTGTTAGGCCAATCAGTGAATTAGGCCCACATGCATTGCAAGAACTTCTGCCTGAGATTCCTCTTTGGGTGAAGACACCTGATTATGAACGGGTTGATTGGTTAAACAAGTTTTTATTGGATATGTGGCCTTACTTAGACAAGGCAATCTGTGAGATTATTAGAAGCACAACAAAACCGATTTTTGCTGAATACATTGGAAAGTATCAGATTAAAGCAATTGAGTTTGAAGAGTTAACGCTTGGTACTCTTCCCCCAACTATTTGTGGCATGAAAGTCTTAGAAACAAATGAAAAGGAATTGGTCATGGAACAAGTTATCAAATGGGCTGGAAATCCTAACATAGTGTTGAATTTGCAAGTGTCATCGTTGAATATCACAGTTCAGTTGGTTGACTTACAAGTATTTGCAATGCCAAGGGTAACTTTAAGACCTTTAGTTCCTACATTTCCATGTTTTGCAAAGGTTGTGGTATCGTTGCTGGAGAAGCCTCATGTGGATTTTGGGATGAAAATATCAGGAGGAGACATCATGGCAATACCTGGTCTTTATAGATTTGTTCAGGAAACGATTAAAAAACAAGTTGCGAGCCTCTATCTGTGGCCTCAAACACTAGAAGTTCCTATTCTTGACGAATCGACGGTGGCGATAAAGAAGCCGGTGGGAATATTACACGTGAATGTCATTCGGGCGCATAAGCTTCTGAAGATGGATTTGTTGGGAAGTTCTGATCCTTATGTCAAACTAAGCCTCACTGGGGACAAACTTCCAGCAAAGAAAACCACTGTCAAAAGGAAGAATTTGAATCCTGTGTGGAATGAGAAGTTCAAGCTTGTTGTAAAGGACCCTCAATCTCAAGTTCTCCAATTACAAGTCTTTGACTGGGACAAGGTTGGTGCACATGACAAGCTGGGAATGCAATTAATCCCTCTTAAGATGCTTAAACCTTATGACAACAAAGAATTCACACTTGATTTGCTTAAGGACACAAACATAAATGAAACTCCAAGTAAGAAGCCAAGAGGGCAAATTGTAGTGGACTTGACATTTGTTCCATTCAAAGAAGATAGTAACAAGTTTGGTGGGAACTCAGAAGGGTATGGAAGAAAGGAAAGTGGAATTGATGTGGTATCTGATGATGAGGTGCAAGAAGGAGCAGGTTTGCTTTCAGTTATAATCCAAGAGGCTGAGGAGGTTGAAGGGGAGCATCACAACAACCCTTTTGCAGTCTTGACTTTTAATGGAGAAAAGAGAAAGACTAAGGTAATGAAGAAAACTCGTCACCCACGTTGGAATATTAACATTTTTCATCTTTTTAATGAAATGATTATTTTGTTAATGCAGGAATCACTGGGGCATGTGGAGATTAACCTGAATGATGTAGTGCACAATGGTCGCATTAATGATAGATACCATCTTATAAATTCAAAGAATGGTGAGATACATGTTGATATACGTTGGAAGGTCGTTTAA 1590 0.395 MGLFGSFLGIIGFVFGIPLGLLVGFFVFVYSETKQVKEPVVRPISELGPHALQELLPEIPLWVKTPDYERVDWLNKFLLDMWPYLDKAICEIIRSTTKPIFAEYIGKYQIKAIEFEELTLGTLPPTICGMKVLETNEKELVMEQVIKWAGNPNIVLNLQVSSLNITVQLVDLQVFAMPRVTLRPLVPTFPCFAKVVVSLLEKPHVDFGMKISGGDIMAIPGLYRFVQETIKKQVASLYLWPQTLEVPILDESTVAIKKPVGILHVNVIRAHKLLKMDLLGSSDPYVKLSLTGDKLPAKKTTVKRKNLNPVWNEKFKLVVKDPQSQVLQLQVFDWDKVGAHDKLGMQLIPLKMLKPYDNKEFTLDLLKDTNINETPSKKPRGQIVVDLTFVPFKEDSNKFGGNSEGYGRKESGIDVVSDDEVQEGAGLLSVIIQEAEEVEGEHHNNPFAVLTFNGEKRKTKVMKKTRHPRWNINIFHLFNEMIILLMQESLGHVEINLNDVVHNGRINDRYHLINSKNGEIHVDIRWKVV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04319 529 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Arst9g04319 529 ProSiteProfiles C2 domain profile. 407 524 IPR000008 -
Arst9g04319 529 Gene3D C2 domain 256 411 IPR035892 -
Arst9g04319 529 SMART C2_3c 427 509 IPR000008 -
Arst9g04319 529 SMART C2_3c 262 362 IPR000008 -
Arst9g04319 529 CDD SMP_SYT 60 248 - -
Arst9g04319 529 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 393 IPR035892 -
Arst9g04319 529 Gene3D C2 domain 427 529 IPR035892 -
Arst9g04319 529 FunFam Synaptotagmin-2 isoform A 256 412 - -
Arst9g04319 529 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Arst9g04319 529 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Arst9g04319 529 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 425 526 IPR035892 -
Arst9g04319 529 PRINTS C2 domain signature 278 290 IPR000008 -
Arst9g04319 529 PRINTS C2 domain signature 327 335 IPR000008 -
Arst9g04319 529 PRINTS C2 domain signature 305 318 IPR000008 -
Arst9g04319 529 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 10 526 IPR045050 GO:0008289
Arst9g04319 529 Pfam C2 domain 427 473 IPR000008 -
Arst9g04319 529 Pfam C2 domain 261 358 IPR000008 -
Arst9g04319 529 CDD C2 263 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04319 Arst-Chr9 118220287 118224586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04319 225 353 C2H2 Transcription Factor Family AT4G21160 31.783 4.42e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04319 - - gmx:100813029 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g04319 9 118220287 118224586 Arst9g04319 9 118220287 118224586 ECH