Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04258 ATGTCTGGCAATACTAATTGCACTGTTTACATAGGTAATCTGGATGAGAGGGTAACAGACAGAGTCTTGTATGATATTTTAATTCAAGCAGGACGAGTGGTAGATTTACATATTCCTAAAGATAAGGAATCAGAAAAACCTAAGGGCTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCGGATTATGCTGTCAAGCTTTTCTCAGGCCTTGTAACACTCTACAACAGAACACTGAAGTTTGCGATATCTGGGAGAGACAAAACCCCTAACGGTTCTGCCGGAGTTACACCAACATCAAATTCGTCTCAAAGATCAAGGCCTTATCCAGTGCCGTTTAATAACTCAGAATCTGATAAGCTATCAGCACATGACCGTTTTTCGGATTATGCAGCTCCTCGTCGCCGAGTAACTGACCTACCTAGTGGGCATGGATCTTACAACAGTGGCCATGATTTTGAGTTCAGCCGTAGAGCTTTTGGGGCAACATTGGACAGCATAAGTGGTTCTAGGTCTCGCCGCTAG 525 0.4343 MSGNTNCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYNRTLKFAISGRDKTPNGSAGVTPTSNSSQRSRPYPVPFNNSESDKLSAHDRFSDYAAPRRRVTDLPSGHGSYNSGHDFEFSRRAFGATLDSISGSRSRR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04258 174 Gene3D - 2 92 IPR012677 -
Arst9g04258 174 MobiDBLite consensus disorder prediction 86 152 - -
Arst9g04258 174 MobiDBLite consensus disorder prediction 90 118 - -
Arst9g04258 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Arst9g04258 174 MobiDBLite consensus disorder prediction 119 133 - -
Arst9g04258 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Arst9g04258 174 SMART rrm1_1 8 82 IPR000504 GO:0003723
Arst9g04258 174 SUPERFAMILY RNA-binding domain, RBD 4 84 IPR035979 GO:0003676
Arst9g04258 174 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04258 Arst-Chr9 117570970 117574195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04258 8 89 Eukaryotic Initiation Factors Gene Family AT1G49760 29.268 6.74e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04258 K12831 - gmx:100784532 270.396