Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04253 ATGGATCCAAAAGGGAGCCTGTGTTCTAACAACTGGGCTAGGTCCGCTTGCTTGACCTCTCCCGGGAATGGATTGCAGACAAATATGTCATCGGATCCATCCCCTTTTTGTGGTGTTCGTGTTGAAGCGCCTTTCAAAGACTTCAACCAACCCTCTACTAACCAGTCTTTGCTTATGGCAGAGCCAAACAAGGATATTAAGATTTCTGATATAGAGAACTGTCCACTGACTGACTCATCATCGCAAACCGGTAAACTTCAAGATTGGGATCCGAATGTGATGTTAAATAACCTTTCCTTTCTGGAAGAAAAGATTCATCAGCTCCAGGGTCTTGTTCATTTGATTGATAATAAGAAGTGTCAACCTTTTGCGCAACCTGATGCGCTTGTGACACAGGAGCAGCAACTCATCACAGCTGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGTAGTCTTCTCCCGTCCGTTAGGCACACTCTCGCAAACACGAGTCCATTGGTCAGTCAGCTTAGCCAGCTTCGTGGCCTTAACCTTCCTTTTGGATCCGGCCCCAGTGGTGGTATTCAGCCACAAAATAATAATGTAAATAAAGTGTTTGATCAGTCCACTCAGAATGATGTACCTAATAATTGTGAACTGGAGCAAAACAACATGGAAGAGCATGAAACAAAAGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCACCTGGTTCCTATGAGATTTTGCAGTTAGAGAAAGAAGAAATCCTTGCACCCCATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGGGATGCGAATCTTCGCATGCACATGCGGGGACATGGGGATGAGTACAAAACCCCGGCGGCTCTTGCAAAGCCGCATAAAGAAACCGGATCCGAACCAAAGCTCATCAAGAGGTATTCCTGTCCCTATGCCGGCTGCAAGCGAAATAAGGATCACAAGAAGTTCCAACCTTTAAAGACTATTTTATGTGTTAAAAACCACTACAAAAGGACGCATTGCGACAAGAGTTACACTTGTAGCAGATGCCACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGCGGTACAACATTTTCGAGGAAGGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCTGCAATTCCTTTGGAAGAAACTAAAGTACCGGCGGTTCCAACTGATCTTGACAGCAAAGATAACACATGTGATAAGGTTGGAAATATGAACTTCTGTTTCGGATCAAATCCTCCAAATGAAAATGAAGTTCAAAACATCATGGATGTGAAGGGTAACATTGATGATCCAATTAATTATTTCTCATCATTGAACTTTGAAGGTTGCAACTTTGGTGGGTTTAATGAATTCTCCCAGTCTCCATTTGAAGATTCAGATGCTTCTTTCTCATTTCTTATGTCTGGATCTTTTAACTATGCTCCTAAACCAGGAGGTGAATCAACTTCTGACAATCTGTAG 1536 0.4271 MDPKGSLCSNNWARSACLTSPGNGLQTNMSSDPSPFCGVRVEAPFKDFNQPSTNQSLLMAEPNKDIKISDIENCPLTDSSSQTGKLQDWDPNVMLNNLSFLEEKIHQLQGLVHLIDNKKCQPFAQPDALVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLANTSPLVSQLSQLRGLNLPFGSGPSGGIQPQNNNVNKVFDQSTQNDVPNNCELEQNNMEEHETKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKVPAVPTDLDSKDNTCDKVGNMNFCFGSNPPNENEVQNIMDVKGNIDDPINYFSSLNFEGCNFGGFNEFSQSPFEDSDASFSFLMSGSFNYAPKPGGESTSDNL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04253 511 Gene3D Classic Zinc Finger 243 313 - -
Arst9g04253 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Arst9g04253 511 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Arst9g04253 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 72 483 IPR044300 GO:0010044|GO:0010447
Arst9g04253 511 SUPERFAMILY beta-beta-alpha zinc fingers 257 284 IPR036236 -
Arst9g04253 511 SMART c2h2final6 259 281 IPR013087 -
Arst9g04253 511 SMART c2h2final6 346 368 IPR013087 -
Arst9g04253 511 SMART c2h2final6 308 341 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04253 Arst-Chr9 117522229 117524874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04253 227 509 C2H2 Transcription Factor Family AT1G34370 71.280 1.23e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst9g04253 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04253 - - gmx:100170687 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g04253 9 117522229 117524874 Arst9g04253 9 117522229 117524874 ECH