Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04239 ATGACACTAACACAAATTCCTGAGAGAGCATCAATGGATATGGAATCATGTGTGCCTCCAGGATTTAGATTTCACCCAACAGAAGAAGAACTTGTGGGGTATTACCTCAAGAGGAAAATTAACTCCCTCAAAATTGATCTAGATGTTATAGTTGAGATCGATCTCTACAAAATGGAACCATGGGACATACAAGATAGATGCAAGCTAGGATATGAGGAACAAAATGAGTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCAACAGGAACAAGAACAAACAGAGCAACTGCTGCTGGATTCTGGAAAGCAACTGGGAGAGACAAGGCTGTTATGTCCAAGAACAGGATCATTGGTATGAGGAAGACTTTGGTCTTCTACAAAGGACGTGCCCCTAATGGCCGCAAAACTGATTGGATTATGCACGAATATCGCCATCAAACCTCTGAACATGGCCCTCCTCAGGAAGAAGGATGGGTTGTGTGTAGAGCATTTCGAAAACCAAGTCCAAGTCATCAAAGGCAATTAGGGTTTGATCCATGGTGTAGTAATCATCATCATCAAGCACATTATTTCAGAGATCAAAGTAGCTATGGTGGAAGGCCCTTATCAATCACAGATCTTCTAACTTCAGAAACTCATCATCATCATCTTCTGAGTCACCCTACCGAAGGTACAAATTTTAGTCATTCCTTCGGTTCAGATCATCACCATCATCAAGAACAACAAGAGTTTGTAATATCAAATAATCATCAACAACTCATTGAGCTTCCACAGCTAGATAGCCCAACAACAACAAGTTTTGCAGTCAAAGAATCATCATCCATTAATAATAACAATGAAGAGTATTGCAGTGATGACAGGAACAACAACAACAACAACATTGATTGGAAAAGCTTGGATAACCTGTTTGCTGATACTTCTAATTACTTCTCATCAAATCCAAACATGTCCCAATTCATGACCATCAATCATCATCTAGGTTGTTTCCCTGGTTCATAA 1002 0.3972 MTLTQIPERASMDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHQRQLGFDPWCSNHHHQAHYFRDQSSYGGRPLSITDLLTSETHHHHLLSHPTEGTNFSHSFGSDHHHHQEQQEFVISNNHQQLIELPQLDSPTTTSFAVKESSSINNNNEEYCSDDRNNNNNNIDWKSLDNLFADTSNYFSSNPNMSQFMTINHHLGCFPGS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04239 333 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Arst9g04239 333 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Arst9g04239 333 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Arst9g04239 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 278 - -
Arst9g04239 333 FunFam NAC domain-containing protein 27 171 - -
Arst9g04239 333 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04239 Arst-Chr9 117425095 117430080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04239 14 333 NAC Transcription Factor Family AT1G71930 54.519 7.63e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Arst9g04239 NAM 7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04239 - - gmx:100812904 465.307