Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04224 ATGATTTTCAACCAAAAGCTTTGCCCTTTTGTTCTTTTTAAATCTTTTGCACTGATGGGTACCTCGAATCTTCTCCTCTTTCTCTTCTCTCTGCTGGGTTTGTGTGCTTTGTCAGCTGCCAAAGTGGTGCTGATTGGGAACAACATCACTCTCTCCTTCGATGATATCGAAGCTAATTTCGCTCCGACGATCAAAGGGTCTGGAGAGTGTGGGGTCTTATATTCGGCAGAGCCACTTGATGCTTGCACTGACCTCTCGAACAAAGCTCCACAACTTCCAAATGCGAGTTTGCCTTTTGTTTTGATGATTAGGGGAGGATGTAGCTTTGAGGAAAAGGTCAGAAGAGCACAAGCGGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAGGATAGTGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGCATAAGAATACATGCTGTGTTTATATCAAAAGCTTCAGGTGAATTACTAAAGGAATATGCCGGAAGGACTGATGTGGAGCTATGGCTAATTCCAAGTTTTGAGAACTCAGCATGGTCAATCATGGCAATTTCATTTATTTCCCTACTAGCAATGTCTGCTGTGCTTGCCACCTGTTTCTTTGTTCGTAGGCATCGCATAAGAAGGGAAAGGCCTCAAGCTTCTCGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCAGTCTTAGAAGACAACTGTACCTCAAGAACATGTGCCATATGTCTTGAAGATTATTGTGTTGGAGAGAAGCTTAGGATACTTCCTTGTTGTCACAAGTTTCATGCTATATGCGTGGATTCTTGGCTTACCTCGTGGAGAACATTTTGCCCAGTTTGTAAGCGTGATGCAAGAACTGGTTTAAGCGAACCTCCGCCTTCTGAATCCACGCCTTTGCTTTCGGCCAGCCCAGCATCTGTATCATCCTCCATCTTATCTTCTACAAGGTCATCATTAGCGTCATCCCCAGCTATTCAAATTGCTCGTCCACCTTCACATGCCTCGTCCGTTTCTCGCAACCACTCATTAGCTAGCACCCCTTATGTTCAGCCATCTTATAGGTCCTACCGACAATCCCCATCGCTAAGCATCAGTCGAAGCTCTGTAGACCTTAGGAATGCATCCCAAAGATCTCTAGCATCTCACTTGAATTCACCACATTCCATGGGCTACCCATCTTTGTCTTCTCTTAACTCGAGGTTCATGTCTGCTTATGTTCCAAGTCCAAGCAATGCTTCTGTAAGTATTCTCGGGTCATCAAGTCACCGACAGCATCCACTCCGATACAGTGAGTCAGCTGCGAGTTTCTCGCCATTTGCATCCGCAAACTCCCTCCCAGAGTGTTAA 1386 0.4509 MIFNQKLCPFVLFKSFALMGTSNLLLFLFSLLGLCALSAAKVVLIGNNITLSFDDIEANFAPTIKGSGECGVLYSAEPLDACTDLSNKAPQLPNASLPFVLMIRGGCSFEEKVRRAQAAGYKAAIVYDNEDSGVLVAMAGNSAGIRIHAVFISKASGELLKEYAGRTDVELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAICVDSWLTSWRTFCPVCKRDARTGLSEPPPSESTPLLSASPASVSSSILSSTRSSLASSPAIQIARPPSHASSVSRNHSLASTPYVQPSYRSYRQSPSLSISRSSVDLRNASQRSLASHLNSPHSMGYPSLSSLNSRFMSAYVPSPSNASVSILGSSSHRQHPLRYSESAASFSPFASANSLPEC 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04224 461 ProSiteProfiles Zinc finger RING-type profile. 252 294 IPR001841 -
Arst9g04224 461 Pfam PA domain 83 160 IPR003137 -
Arst9g04224 461 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 212 299 - -
Arst9g04224 461 Gene3D - 41 174 - -
Arst9g04224 461 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 176 309 - -
Arst9g04224 461 SMART ring_2 252 293 IPR001841 -
Arst9g04224 461 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 40 174 - -
Arst9g04224 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 299 IPR013083 -
Arst9g04224 461 SUPERFAMILY RING/U-box 242 305 - -
Arst9g04224 461 CDD PA_C_RZF_like 35 181 IPR044744 -
Arst9g04224 461 Pfam Ring finger domain 251 294 IPR001841 -
Arst9g04224 461 SUPERFAMILY PA domain 100 168 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04224 Arst-Chr9 117249586 117254356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04224 37 460 C3H Transcription Factor Family AT1G22670 48.387 9.84e-122 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04224 K15692 - gmx:100791248 659.062