Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04190 ATGGCCTCCTCCCAGCATCGCTGCGTTTTCGTTGGCAATATACCATATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGTCCTGTAGTCTCATTCAGATTAGTTATTGATAGAGAAACTGGGAAGCCAAAGGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACAGCTTTGAGTGCTCGGCGGAATCTTCAGGGTTATGAAATTAACGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATAGAGAGCAGGGTCGTGGAGGGCCTGGACTGTCAGCAAATGTTGACCCTCAGAAACATGTAGGAAGCAGCTCAGTTATCCAAGGGGATGCTGCTCATCATCAACCTATTGGTCTCCATATTGCCATAACAGCTGCGTCTGTCATGACAGCAGCTCTAGGTGGTGCTCAGTTTGGCGTCCAGTCGGCTCAAAATGGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCGTTAACTCTGCACCTTGCTAAAATGTCAAGGAATCAGTTAAATGAGATAATCTCTGAGGTCAAGGCAATGGCTACACAGAATAAGGACATGGCTCGGCAACTGTTACTTTCAAGACCACAGTTGCCAAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACCTCCCAAGTGTTACAAATGCCAAACCTTAGGATGGTTTCGGAGCAGGCCTCACAATCTTCAGTAAATGAAGGCCAGCTAGGTCAGCCGGCATTAGTTCAGACTCTGTCTGGCCTACCCCAGAGCTTGGGACAGAGTACATTGCAGCCTGGTTTGACACCTTATGTTCAAGAAGGTCAAGCGAACGTCATGCCCCATAATCCTTTGGTTCCTAATCAATTGAATGCACATCCAAGGCCTCCGTTGCAGCCTAGAGTGCCACTTCAACAACATTCAATCAACCATGTTGGACAGTTGGGAACGCTGTCAGGGCAGTCAAATTTAATGCCTCCTTCAGCACGACCCCAGTCATTGGGGGGTTTGTCTATGAGGCCCTCAGTTCAATCTTCAACGTCGACTGCCCCGAACCAGCAAAGGCATGCCCCTTTGCCACCACATTCAGCACTTGTTGGAAGCTCAACTGTAGGACATAATATTCAAATGGTTCGACCAGATGCAAGCTTTCAGCCTAGCCCCTCTGTATCATCAGGAATTCCTCACTTAATTAGTAAGGAAGGTGATAGATCTGCATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAATATGGTTCATGGTTTGTCTGAATCGTTGGGTCGCCCTTCAAAGCTCATGAAATTGGATGACGGAAGGAGTACGCCTTTTCCTTTTGCTGATGTGCCTGTGACCAATGGTTCATCCCACATTCTTGGAAACAACTCGTTGCCTGCTCTTGCAGCTCCTAAAACAGAAGTGCCTGCTCAGCTTCCAGCAGATGTAGAGTCTGCTTTACTGCAACAAGTGTTGAATCTAACACCGGAGCAATTGAGTTCGCTGCCGCCAGAGCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTACGGCGAGATCAGATGCAGTCCTCATAG 1596 0.4743 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGLSANVDPQKHVGSSSVIQGDAAHHQPIGLHIAITAASVMTAALGGAQFGVQSAQNGLQSQSALAHDPLTLHLAKMSRNQLNEIISEVKAMATQNKDMARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRMVSEQASQSSVNEGQLGQPALVQTLSGLPQSLGQSTLQPGLTPYVQEGQANVMPHNPLVPNQLNAHPRPPLQPRVPLQQHSINHVGQLGTLSGQSNLMPPSARPQSLGGLSMRPSVQSSTSTAPNQQRHAPLPPHSALVGSSTVGHNIQMVRPDASFQPSPSVSSGIPHLISKEGDRSAYSNMPLGVEKTNMVHGLSESLGRPSKLMKLDDGRSTPFPFADVPVTNGSSHILGNNSLPALAAPKTEVPAQLPADVESALLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQSS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04190 531 Gene3D - 487 527 IPR038192 -
Arst9g04190 531 FunFam Cleavage stimulating factor 64 1 116 - -
Arst9g04190 531 Pfam Transcription termination and cleavage factor C-terminal 492 525 IPR026896 GO:0031124
Arst9g04190 531 FunFam Related to Cleavage stimulation factor 484 526 - -
Arst9g04190 531 MobiDBLite consensus disorder prediction 290 309 - -
Arst9g04190 531 SUPERFAMILY RNA-binding domain, RBD 4 102 IPR035979 GO:0003676
Arst9g04190 531 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 528 - -
Arst9g04190 531 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 229 IPR025742 -
Arst9g04190 531 FunFam Cleavage stimulating factor 64 156 231 - -
Arst9g04190 531 MobiDBLite consensus disorder prediction 323 363 - -
Arst9g04190 531 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Arst9g04190 531 SMART rrm1_1 8 81 IPR000504 GO:0003723
Arst9g04190 531 MobiDBLite consensus disorder prediction 323 375 - -
Arst9g04190 531 MobiDBLite consensus disorder prediction 82 115 - -
Arst9g04190 531 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Arst9g04190 531 Gene3D - 157 231 - -
Arst9g04190 531 CDD RRM_CSTF2_RNA15_like 7 83 - -
Arst9g04190 531 Gene3D - 1 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04190 Arst-Chr9 116959739 116965400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04190 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.66e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04190 K14407 - gmx:100794399 745.347