Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04169 ATGGAGCTTCTGAACTTTACTCATTTGAATGGGAAACCCATTCGAATTATGTTTTCCCAACGTGATCCTAGCATTCGGAAAAGTGGATTTGCCAATGTGTTCATCAAGAACCTTGATACGTCAATCGACAACAAGGCATTACATGACACATTTGCTACTTTTGGAACTGTGCTTTCTTGCAAGGTTGCCATTGATAGCAATGGAAATTCAAAAGGCTATGGTTTTGTACAATTTGAAAAGGAAGAAGCCGCTCAAAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAGGTTTTTGTGGGACTCTTTGTTCGACGCCAGGAAAGGGCTCAAACAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTGTCTGAAACACAAACTGATGACAACTTGAAGCAACTGTTTAGCCCATATGGTACAATAACAAGTGCAACAGTTATGAAAGATATGAATGGGAAGTCTAGATGTTTTGGTTTTGTTAATTTCCAGAGTCCGGATTCAGCGGCTGCTGCAGTTGAGAAGTTAAATGGAACTACGATCAATGATGACAAGGTTTTATACGTGGGGAGAGCTCAGAGGAAAGCTGAAAGAGAGGCAGAGTTGAAAGCCAAATTTGAGCAGGAAAGATTAAGCAGATATGAGAAGTTACAAGGTGCAAACTTGTACTTAAAAAATCTTGATGACAGCATCAACGATGAGAGGTTGAAGGATCTATTTTCTGAATTTGGAACAATAACATCTTGCAAGGTGATGCTTGATCCACATGGGCATAGCAGGGGGTCTGGTTTTGTTGCATTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAGATGAATGGGAAGTTGGTTGGGCGGAAGCCTCTGTATGTTGCTGTAGCCCAGCGCAAAGATGAGAGGAAAGCTCGTCTACAGGCACAGTTTGCTCAAATGCAGTCACCTGGTGGAATATCACCTTTGCCCTCAGGAATTCCTGGGTATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAGCTGTATTTTGGTCAAGGAACACCTGGCTTCATGCCACCACAACCTGCTGGCTTTGGTTTCCAGCAGCAAATCTTGCCTGGAATGCGGCCTGGCGTTGCTCCAAATTTTGTTATGCCATACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGAATGGGCATTCGACGAGGGGGAAACCTCCAACAAGTGCAGCAGAACCAGATGCTGCATCGCAACTCCAACCAAGGGTTTAGATATATGGGAAATGGCAGAAATGGTATGGATCCATCCGTTCCTCAAGGTCTAGTTGGTCCAATGATGCCCATGTCCTTTGATGGATCTGTATCTCCTATTGATAACCAGCGCCCTGGAACATTGTCTACCACCCTTGCCTCTGCTCTGGCTTCTGCAACCCCAGAAAATCAGCGAGTGATGCTGGGTGAACATCTGTATCCTCTTGTGGAGCGTCTTACTCCAACTCAACACACGGCAAAGGTGACGGGCATGTTGCTGGAAATGGACCAGTCAGAGGTAATCCATCTCATTGAGTCCCCTGAGGACCTAAAGATTAAGGTCTCCGAGGCAATGCAGGTCCTTCGCGAAGCTGCCACGGGTTCTGATGTTGGTGATCAGCTGGGCTCATTGTCATTGAATTAA 1671 0.4512 MELLNFTHLNGKPIRIMFSQRDPSIRKSGFANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAIDSNGNSKGYGFVQFEKEEAAQNAIKQLNGMLINDKQVFVGLFVRRQERAQTNGSPKFTNVYVKNLSETQTDDNLKQLFSPYGTITSATVMKDMNGKSRCFGFVNFQSPDSAAAAVEKLNGTTINDDKVLYVGRAQRKAEREAELKAKFEQERLSRYEKLQGANLYLKNLDDSINDERLKDLFSEFGTITSCKVMLDPHGHSRGSGFVAFSTPEEASKALNEMNGKLVGRKPLYVAVAQRKDERKARLQAQFAQMQSPGGISPLPSGIPGYHPGAPRLAPQQLYFGQGTPGFMPPQPAGFGFQQQILPGMRPGVAPNFVMPYHLQRQGQPGQRMGIRRGGNLQQVQQNQMLHRNSNQGFRYMGNGRNGMDPSVPQGLVGPMMPMSFDGSVSPIDNQRPGTLSTTLASALASATPENQRVMLGEHLYPLVERLTPTQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAATGSDVGDQLGSLSLN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04169 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Arst9g04169 556 Gene3D - 106 218 IPR012677 -
Arst9g04169 556 FunFam Polyadenylate-binding protein 461 543 - -
Arst9g04169 556 Coils Coil 195 223 - -
Arst9g04169 556 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 1 538 IPR006515 GO:0003723
Arst9g04169 556 Gene3D - 4 103 IPR012677 -
Arst9g04169 556 SUPERFAMILY RNA-binding domain, RBD 6 117 IPR035979 GO:0003676
Arst9g04169 556 SMART rrm2_1 227 299 IPR003954 GO:0003676
Arst9g04169 556 SMART rrm2_1 123 195 IPR003954 GO:0003676
Arst9g04169 556 SMART rrm2_1 32 104 IPR003954 GO:0003676
Arst9g04169 556 FunFam Polyadenylate-binding protein 209 314 - -
Arst9g04169 556 SUPERFAMILY RNA-binding domain, RBD 121 307 IPR035979 GO:0003676
Arst9g04169 556 CDD RRM4_I_PABPs 225 303 - -
Arst9g04169 556 FunFam Polyadenylate-binding protein 112 208 - -
Arst9g04169 556 FunFam Polyadenylate-binding protein 32 105 - -
Arst9g04169 556 CDD RRM2_I_PABPs 29 104 IPR045305 -
Arst9g04169 556 SUPERFAMILY PABC (PABP) domain 409 541 IPR036053 GO:0003723
Arst9g04169 556 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 464 542 IPR002004 GO:0003723
Arst9g04169 556 Gene3D - 463 542 - -
Arst9g04169 556 PANTHER RNA BINDING PROTEIN 2 328 - -
Arst9g04169 556 Gene3D - 222 325 IPR012677 -
Arst9g04169 556 SMART rrm1_1 32 104 IPR000504 GO:0003723
Arst9g04169 556 SMART rrm1_1 227 299 IPR000504 GO:0003723
Arst9g04169 556 SMART rrm1_1 123 196 IPR000504 GO:0003723
Arst9g04169 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 303 IPR000504 GO:0003723
Arst9g04169 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 191 IPR000504 GO:0003723
Arst9g04169 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 100 IPR000504 GO:0003723
Arst9g04169 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 296 IPR000504 GO:0003723
Arst9g04169 556 CDD RRM3_I_PABPs 121 201 - -
Arst9g04169 556 SMART poly_2 476 540 IPR002004 GO:0003723
Arst9g04169 556 Gene3D - 25 81 IPR012677 -
Arst9g04169 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 108 IPR000504 GO:0003723
Arst9g04169 556 Pfam Poly-adenylate binding protein, unique domain 472 537 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04169 Arst-Chr9 116831788 116835996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04169 1 551 Eukaryotic Initiation Factors Gene Family AT1G71770 59.115 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04169 K13126 - gmx:100783163 940.258