LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst9g04144	ATGGGGTGTGTTCAGGCCAAGACACTTGAAGGTCCTGCTCATGAACCCAAGGGACTAGACAGGCTCAAATTGGAAAATGGGTATGTGTCAAATTCTGATTTTGTTGCTCACAGAAGATCCACTGGTCAAAAGTATGAACCTATGGAGGATGCTAATGGTAGGCATCATCATCATCATCAGAAGAGAGAACAACCTCAACCCAGAAACCTTGCAAGAGTTAATGAGCTTGCTGCTGTTCCTGGCGGCAACAATGGTGAAAGTGGCAAGGGGAAAGGGGGTGTTACTAGAGAGAGGAAGAAGAGAGAATTGGCAAAGAAGAAGACTTTTGAGGATGACTATGAGATGGTTGATGGATGGCCCAAATGGCTAGTTGATAATGTTCCTGCTCAAGTCTTTGGTGGATTGGTCCCAAAGAGTGCTGAATCCTACAAAATGATTGATAAGGTAGGACAAGGAACATACAGCAATGTCTATAAAGCTCTAGATCGGGACACCGGAGAAATTGTTGCCCTAAAAAAGGTTCGCTTCAATACATCAGAGCCCGAAAGCATTAAATTTATGGCAAGAGAAATCTTGATACTACAAAGATTGGATCATCCTAATGTGCTAAAACTTAAAGGATTAGCCACTTCAAGAATGCAATACAGTATATATCTAGTTTTTGACTTCATGCAAACGGATTTGACAAGAATTATCTCTCATTCTGAAGAGAGGCTAACCGAGCCGCAGGTCAAGTGCTATATGCAGCAATTGCTTTCTGGTCTGCAGCATTGCCATGAGAGGGGAATTTTACATCGAGATATAAAGGGATCAAACCTTTTGATTGATAGAAATGGAATGCTTAAGATTGCAGATTTTGGGCTAGCCAACTATTATAGTCCAAACCATGAGCATCCTCTCACAAGCCGGGTCGTGACACTCTGGTATAGAGCCCCTGAGTTGCTGTTAGGTGCCACGGATTATGGAGTTGGTATTGATCTATGGAGTGCTGGATGCCTCCTTGCAGAAATGTTCACCGGAATTCCACTCATGCCTGGCCGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGATTATGTGGCACACCATCAGAGGAGTACTGGAAAAAATTTAAAATATCTGCATCATTTAGACCTCCAAGGTCGTATCGACCTAGCTTTCTAGAAACTTTCAGGGATCTCCCTCCATCTTCTTTGGGGCTTTTATGTACCCTCCTTGCTTTGGAACCGGCATTCCGTGGAACTGCATCTAAAGCTCTTAACAATCCGTTTTTCTTTACAAGCCCGTTGGCCTGTGATCTCTCTGGTTTGCCTGTAATCCACAGAGAAGAAGATGAACATGATCAAGCCAAAGAACAGATCAAGTACATGAACTCTAAAATCAGGCGTTCTCGTACATACCTGGAGCGTCGCAAGAGTCTAGCTCCCAAGAGGCAGATAGAACATACTGTGTCTAACAAGGAGGATTCAAGAAGGAATGTGGAACCTGAAACTTACATTCCAAGCGAAGAACCGGGTAGCGCAACCATAAGCAGTACCTCATCTAGTGTAAACCCTGGTGTGGCTAAGGAGCAGTTTCCACTTTTGGCTTCAGATAAAAAGGTGGCCCCAAAATACCATCACCATGGCAGTGTTGGTGAAATTACAAGGTACCTTCCTCCATTACCCAAGTCAAAACCAAAAGCAACCCAGAATGATGACTACAACAGATTCAGTTTCAGGAGTGCTTCTACCAGAGAATTTAGAAACTTTAAGAGGGAGGACTATTTACTCTTTGAAATTGATTAG	1788	0.4318	MGCVQAKTLEGPAHEPKGLDRLKLENGYVSNSDFVAHRRSTGQKYEPMEDANGRHHHHHQKREQPQPRNLARVNELAAVPGGNNGESGKGKGGVTRERKKRELAKKKTFEDDYEMVDGWPKWLVDNVPAQVFGGLVPKSAESYKMIDKVGQGTYSNVYKALDRDTGEIVALKKVRFNTSEPESIKFMAREILILQRLDHPNVLKLKGLATSRMQYSIYLVFDFMQTDLTRIISHSEERLTEPQVKCYMQQLLSGLQHCHERGILHRDIKGSNLLIDRNGMLKIADFGLANYYSPNHEHPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGIPLMPGRTEVEQLHRIFRLCGTPSEEYWKKFKISASFRPPRSYRPSFLETFRDLPPSSLGLLCTLLALEPAFRGTASKALNNPFFFTSPLACDLSGLPVIHREEDEHDQAKEQIKYMNSKIRRSRTYLERRKSLAPKRQIEHTVSNKEDSRRNVEPETYIPSEEPGSATISSTSSSVNPGVAKEQFPLLASDKKVAPKYHHHGSVGEITRYLPPLPKSKPKATQNDDYNRFSFRSASTREFRNFKREDYLLFEID	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst9g04144	595	SUPERFAMILY	Protein kinase-like (PK-like)	138	429	IPR011009	-
	Arst9g04144	595	FunFam	Putative serine/threonine-protein kinase	226	463	-	-
	Arst9g04144	595	MobiDBLite	consensus disorder prediction	39	56	-	-
	Arst9g04144	595	MobiDBLite	consensus disorder prediction	1	101	-	-
	Arst9g04144	595	Pfam	Protein kinase domain	143	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst9g04144	595	MobiDBLite	consensus disorder prediction	472	519	-	-
	Arst9g04144	595	SMART	serkin_6	143	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst9g04144	595	Gene3D	Phosphorylase Kinase; domain 1	134	225	-	-
	Arst9g04144	595	FunFam	probable serine/threonine-protein kinase At1g54610	130	225	-	-
	Arst9g04144	595	MobiDBLite	consensus disorder prediction	504	519	-	-
	Arst9g04144	595	Coils	Coil	440	460	-	-
	Arst9g04144	595	MobiDBLite	consensus disorder prediction	548	567	-	-
	Arst9g04144	595	ProSiteProfiles	Protein kinase domain profile.	143	425	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst9g04144	595	MobiDBLite	consensus disorder prediction	472	498	-	-
	Arst9g04144	595	ProSitePatterns	Protein kinases ATP-binding region signature.	149	172	IPR017441	GO:0005524
	Arst9g04144	595	Gene3D	Transferase(Phosphotransferase) domain 1	226	486	-	-
	Arst9g04144	595	PANTHER	CELL DIVISION PROTEIN KINASE	141	430	-	-
	Arst9g04144	595	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	263	275	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst9g04144	Arst-Chr9	116595909	116599423	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst9g04144	128	458	Core Cell Cycle Gene Families	AT5G10270	44.413	1.64e-92	292

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Arst9g04144		Pkinase	7.8e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst9g04144	K08819		-	gmx:100776854	815.839