Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04103 ATGTCCTTCCGTAGTATAGTTCGCGATGTAAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGACTTGAGGCTTTCTGGCCATCACAGGGGCAAGTCTCGTAGCTCTGTCCACGAGTTGCATGATCAGCCTCCGGTTATACAGAACAGCCGGTGGGCTAGTCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGGTTGGAGGCTAGTGAGAGTACCTGGCCCGGTCGTAAGCATGTGGTTGCGTGCGCAGCTGTGTGCAAAACCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAATATTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAGTCTAAGCTGACATACCATCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAAAGAACCAGAAGGACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACGTATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTATAACAACGCTCAGCTGTCTCCACCGGGCCAGAGCCGCAGGTTTTATTCGAAAAAGGTCTCTCCGAAGCTCCCTAGTGGCAGCTACAATATCGCCCAGGTCAACTACGAGTTGAATGTCCTTGGTACTAGGGGCCCAAGAAGGATGCATTGCACCATGTATTCAATCCCCACATCATGCCTTGAGCCCGGCGGCTCGGTTCCAGGTCAGCCAGAGCTCCTGCCCCCCTCCCTTGAGGATTCTTTCCGGAGTATCTCCTTCTCAAAGTCGATAGGCCATTCAACTGAATTTAGCAGCTCCAGGTTCTCTGACATACTGGGCGCGGGCAATGAGGACGTGGAGGAAAAGGAGAGACCACTAGTCCTTAAGAACAAGCCTCCACGGTGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACCGTCGCCTCGGTCAAGAATTTCCAGCTGATTGCTGCAAATTCACAACCTGCTGCTCCTCCTCCTCCTGCAGGAACAGGACCACCAACATCTCAGCCGTCGCAGTCTGACCCTGACAAGATTATTCTTCAGTTTGGCAAGGTCGGCAAGGATATGTTCACAATGGACTACCGGTACCCTCTATCAGCATTTCAGGCATTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 1296 0.4915 MSFRSIVRDVRDGFGSLSRRSFDLRLSGHHRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKTWREMCKEIVSSPEYCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLAAKRTRRTTCTEYIISMDADNVSRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGQSRRFYSKKVSPKLPSGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPTSCLEPGGSVPGQPELLPPSLEDSFRSISFSKSIGHSTEFSSSRFSDILGAGNEDVEEKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANSQPAAPPPPAGTGPPTSQPSQSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04103 431 Gene3D Tubby Protein; Chain A 110 431 IPR025659 -
Arst9g04103 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Arst9g04103 431 PANTHER TUBBY-RELATED 37 429 - -
Arst9g04103 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Arst9g04103 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Arst9g04103 431 FunFam Tubby-like F-box protein 48 101 - -
Arst9g04103 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Arst9g04103 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Arst9g04103 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Arst9g04103 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Arst9g04103 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Arst9g04103 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Arst9g04103 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Arst9g04103 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Arst9g04103 431 CDD F-box_AtTLP-like 53 97 - -
Arst9g04103 431 Gene3D - 48 101 - -
Arst9g04103 431 FunFam Tubby-like F-box protein 110 431 - -
Arst9g04103 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Arst9g04103 431 Pfam Tub family 114 426 IPR000007 -
Arst9g04103 431 MobiDBLite consensus disorder prediction 365 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04103 Arst-Chr9 116250568 116253751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04103 1 431 TUB Transcription Factor Family AT1G76900 69.717 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Arst9g04103 Tub 1.3e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04103 K19600 - qsu:111992792 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04488 5 106212677 106216654 Arst9g04103 9 116250568 116253751 PCT