Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04055 ATGTACCAGCCTTCCTCTTCCTCCTCCTCTTCTTCTCAGGCACACAACTCAACCGTTTCTGAACCAGCTTTGACCCGCTACGGTTCAGCCCCTGGCTCTCTCCTCCGCACAGCCGTCGATGCTGTCATAGCCGGAGGGGCTGGAGGCCCCCGACATCCTCATCCTCTCATGCCTACGGGATCCCACTACTTCTCCGGGGAGTCCTCCGAGTCCACCTCCAAAGTCAACGACAGTTCCAAAGATCATAACCTTCAGAGAAGCTCCCCCGCCGGCTTCCTCTCCCACCTTGCTGACAATGCTGGTACCGAAAGTATTCTCTCTCAGATATCAGAGGTAAGCGAGAGTGTTGTGGTGGATGCATCCACTTCTGAGCGTGCTTATGCAATGGACCACTGCTGGGACAACTCTAACTCCAACTCCAGCTCCATTGTCTTCTCCGCCCCGCCCTCCAAACGCTCCAAAAATATTGACGGTGACATCCTAAATTGTCTCACTGCCTTAGACTCTCAGTATAGTCTGCCACAAACTGCTCTTGAAATGGCAACAATGGAGAAGCTAATGCACATTCCTGAAGACTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCCACTCACCCTCGCAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGCGGTAAGCTGAAGAAACTGCAGGAACTTGTACCCAATATGGATAAGCAAACAAGCTATGCAGACATGCTAGATTTGGCAGTTCAACATATTAAAGGTCTTCAAACTCAAGTCCAGGTGCGTAAAAATATATTAGTGTTCACTGTATAA 810 0.5012 MYQPSSSSSSSSQAHNSTVSEPALTRYGSAPGSLLRTAVDAVIAGGAGGPRHPHPLMPTGSHYFSGESSESTSKVNDSSKDHNLHRSYGLQQDAFAGSSSSSSSLLRQRSSPAGFLSHLADNAGTESILSQISEVSESVVVDASTSERAYAMDHCWDNSNSNSSSIVFSAPPSKRSKNIDGDILNCLTALDSQYSLPQTALEMATMEKLMHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQTQVQVRKNILVFTV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04055 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 285 IPR036638 GO:0046983
Arst9g04055 292 Gene3D - 224 287 IPR036638 GO:0046983
Arst9g04055 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 277 IPR011598 GO:0046983
Arst9g04055 292 CDD bHLH_AtbHLH_like 232 283 IPR045239 -
Arst9g04055 292 MobiDBLite consensus disorder prediction 1 29 - -
Arst9g04055 292 SMART finulus 233 283 IPR011598 GO:0046983
Arst9g04055 292 MobiDBLite consensus disorder prediction 45 84 - -
Arst9g04055 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 283 - -
Arst9g04055 292 Pfam Helix-loop-helix DNA-binding domain 232 278 IPR011598 GO:0046983
Arst9g04055 292 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04055 Arst-Chr9 115660867 115663905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g04055 23 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 45.104 1.78e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst9g04055 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04055 - - ahf:112776078 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g04055 9 115660867 115663905 Arst9g04055 9 115660867 115663905 ECH
Arst6g01253 6 11769574 11772140 Arst9g04055 9 115660867 115663905 ECH
Arst6g01252 6 11769574 11773469 Arst9g04055 9 115660867 115663905 ECH