Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g04034 ATGGATCGCAAAAGGGGACGGCACGAACATCCTTTCAACGGCACCGGCAATGGCGCCTCCAAGAAATTCAGGCCACCTTCAGCTTCAGAAATGGAGTCTTTTCCAACTGGTTTAGGAAGCAAATTGAAGCCTTGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGATGCCATTTCTTGCATTATGTTCCTGGTGGCATCAAAGCCGTTCAAATGATGAATGCTGGTAGCAACCCTGCTCTTCCTCAAGTTAGTAGAACACCACCTGTTCCTCCATCTTTCCCGGATGGGTCTTCTCCTCCAATGGTTAAAACCAGATTGTGCAACAAGTATAATTCAAGCGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCTCATGGTGAGTGGGAGATTGGCAAGCCTACAATGCCTTCATATGAAGACAGACAAAGGATTGGTGGGCGAGTTGAGACTCCAGTTCATGGAGCTGCTGCTGGCTTTGGCGCCTCAGCTACCGCTAAGATTAGTATCAATGCTTCCCTTGCTGGGGCTGTTATTGGGAAAAATGGTATCAACTCGAAGCAAATCTGTCGTGTAACAGGAGCAAAACTTTCTATCAGGGAACATGATTCTGATCCTAACCTTAAAAACATTGAGCTTGAAGGAAGTTTTGATCAGATCAAACAAGCAAGTTCCATGGTCCACGAACTTATTCTGAATGTTAGTTCGGCTGCTGGACCTGCAAAGAAGAATGTCACTTCATATGGTCCTGGTTCAAACAACTTCAAAACCAAGATATGTGAAAAATTTTCAAAAGGCTCCTGCACTTTTGGGGAGAAGTGCCACTTTGCCCATGGAATAGAAGAATTACGCAAGAGTGGAATGTGA 879 0.4494 MDRKRGRHEHPFNGTGNGASKKFRPPSASEMESFPTGLGSKLKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVQMMNAGSNPALPQVSRTPPVPPSFPDGSSPPMVKTRLCNKYNSSEGCKFGDKCHFAHGEWEIGKPTMPSYEDRQRIGGRVETPVHGAAAGFGASATAKISINASLAGAVIGKNGINSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQIKQASSMVHELILNVSSAAGPAKKNVTSYGPGSNNFKTKICEKFSKGSCTFGEKCHFAHGIEELRKSGM 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g04034 292 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Arst9g04034 292 Pfam RNA-binding, Nab2-type zinc finger 44 64 - -
Arst9g04034 292 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
Arst9g04034 292 CDD KH-I_AtC3H36_like 171 235 - -
Arst9g04034 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 283 IPR000571 GO:0046872
Arst9g04034 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 107 132 IPR000571 GO:0046872
Arst9g04034 292 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Arst9g04034 292 Gene3D - 100 137 - -
Arst9g04034 292 Gene3D - 258 290 - -
Arst9g04034 292 ProSiteProfiles Zinc finger C3H1-type profile. 105 133 IPR000571 GO:0046872
Arst9g04034 292 SUPERFAMILY CCCH zinc finger 103 135 IPR036855 GO:0046872
Arst9g04034 292 SMART c3hfinal6 105 132 IPR000571 GO:0046872
Arst9g04034 292 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Arst9g04034 292 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Arst9g04034 292 Gene3D K Homology domain, type 1 161 257 IPR036612 GO:0003723
Arst9g04034 292 SUPERFAMILY CCCH zinc finger 258 288 IPR036855 GO:0046872
Arst9g04034 292 SMART kh_6 166 236 IPR004087 GO:0003676
Arst9g04034 292 MobiDBLite consensus disorder prediction 1 36 - -
Arst9g04034 292 FunFam Zinc finger CCCH domain-containing protein 253 289 - -
Arst9g04034 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 163 238 IPR036612 GO:0003723
Arst9g04034 292 FunFam Zinc finger CCCH domain-containing protein 100 137 - -
Arst9g04034 292 SUPERFAMILY CCCH zinc finger 40 65 IPR036855 GO:0046872
Arst9g04034 292 PANTHER CCCH ZINC FINGER/TIS11-RELATED 18 156 IPR045877 GO:0003729
Arst9g04034 292 Pfam KH domain 170 232 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g04034 Arst-Chr9 115597484 115601080 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst9g04034 KH_1 1e-09 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g04034 - - gmx:100792652 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g04034 9 115597484 115601080 Arst9g04034 9 115597484 115601080 ECH