Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03987 ATGGCATCAGCTTCTTGTGCCAGTAAGAGCCCGTTACCAATGAAAGATGCTGGAGTAGCTTCAGCTTCGGGGTATTATGTGTATCCTCCACCGCAAGCAAGCTACGAGGAGGTTGCAAACAATCCCAAGCTCTTCATGGAAACCTTGGAGAAGCTCCACTCTTCTATGGGCACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAATTAGATTTGCATCGACTCTTTGTTGAAGTAACTTCTAGAGGAGGTATTGAGAAGATAATCAAAGAGAGAAAATGGAAGGAAGTAACTGCAACTTTCAATTTTCCATCAACAGCTACAAATGCCTCTTTTGTTCTGCGGAAATACTATGCTTCATTGCTTTACCATTATGAACAAATCTACTATTTCAAAGCCCCTGGATGGAGTCCAGCTGCTTCCAGCTTTTTCTCTTCGGCAGGTGGTCTGCAGTGTCAATCATCCATTCCAGTTCCAGTGCAAAAGGCACAGTTTATGCTGCCGTCATCAGGATTTCAATCGCCGGTCTTTCAACAGTCGAGCGCTAATGCTGCTGAATTGCCTGAAGCCATGAGAAAATCTTCAGGAGGGTCTCAGGTGATTGGGGTCATTGATGGAAAGTTCGAAAGTGGCTATCTAGTTACTGTAACAATAGGTTCAGAGAAACTTAAAGGCGTCCTCTATCAGGCTCCACAAAAACCTGGATTGTCTACTTCTCATCACGGAGTTTTGGCCAACAACAGTGGCGCCTCTGCTCCGTTAGGTGTCCGTCGGCGCCGGCGCAGAAAGAAATCAGAAATAAAGCGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTACAATTTCTTTTTTGCGGAACAGCATGCAAGGCTAAAAGCACACCATCATGGGAAGGACAGGGAGATTAGTAGGATCATTGGCGAACTCTGGAACAAGTTGAATGAATCAGAAAGAGTAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGGTATAGAGTGGAAATGGAGGATTATCGTGAGAAGCAGAAGATGGGCCAAGTTATTAGTGATGCTGTGCCTCTGCAGCAGCGGCTTCCTGAGGACATGAAATTGGATGAAACGGAGGGCGATTCTTTCCAAACACCAGAGGAAAGCAGTACTGGTGGAAGCGACTATGACGATGATAGAGCTATGGAAAAAGATTTTGATGAGGATGCATCACCGGTTGCCGGCATGGGTGCTGAATCTAGCTGCTTGGGCTCGGAGAAGTCACCCAATGGAGGTTTATGA 1278 0.457 MASASCASKSPLPMKDAGVASASGYYVYPPPQASYEEVANNPKLFMETLEKLHSSMGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKERKWKEVTATFNFPSTATNASFVLRKYYASLLYHYEQIYYFKAPGWSPAASSFFSSAGGLQCQSSIPVPVQKAQFMLPSSGFQSPVFQQSSANAAELPEAMRKSSGGSQVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQKPGLSTSHHGVLANNSGASAPLGVRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKAHHHGKDREISRIIGELWNKLNESERVVYQEKAMKDKERYRVEMEDYREKQKMGQVISDAVPLQQRLPEDMKLDETEGDSFQTPEESSTGGSDYDDDRAMEKDFDEDASPVAGMGAESSCLGSEKSPNGGL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03987 425 SUPERFAMILY HMG-box 263 346 IPR036910 -
Arst9g03987 425 Gene3D - 32 135 IPR036431 GO:0003677
Arst9g03987 425 MobiDBLite consensus disorder prediction 385 402 - -
Arst9g03987 425 SMART hmgende2 274 343 IPR009071 -
Arst9g03987 425 ProSiteProfiles ARID domain profile. 39 130 IPR001606 GO:0003677
Arst9g03987 425 MobiDBLite consensus disorder prediction 238 282 - -
Arst9g03987 425 FunFam High mobility group B protein 15 257 352 - -
Arst9g03987 425 SUPERFAMILY ARID-like 34 135 IPR036431 GO:0003677
Arst9g03987 425 Pfam ARID/BRIGHT DNA binding domain 43 126 IPR001606 GO:0003677
Arst9g03987 425 CDD HMG-box_AtHMGB9-like 275 341 - -
Arst9g03987 425 FunFam High mobility group B protein 15 33 145 - -
Arst9g03987 425 Coils Coil 324 344 - -
Arst9g03987 425 Gene3D High mobility group box domain 259 354 IPR036910 -
Arst9g03987 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 275 342 IPR009071 -
Arst9g03987 425 SMART bright_3 40 131 IPR001606 GO:0003677
Arst9g03987 425 SMART ARID_2 36 126 - -
Arst9g03987 425 CDD ARID_HMGB9-like 41 126 IPR045303 GO:0003677
Arst9g03987 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 379 - -
Arst9g03987 425 MobiDBLite consensus disorder prediction 368 425 - -
Arst9g03987 425 Pfam HMG (high mobility group) box 275 342 IPR009071 -
Arst9g03987 425 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03987 Arst-Chr9 115229077 115233864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03987 1 373 ARID Transcription Factor Family AT1G04880 60.677 1.20e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Arst9g03987 ARID 5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03987 - - gmx:100783284 585.104