Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03943 ATGGTGTCGGTGCTGCCGTATGCAGATGTTGATTCCAGTTTGAGGGCCCTTGCTGGTTCCGCCGAGGGCTTCGGCCGCCACGCCATTGGTGGCCTCCACGGTTCTCTCTATGTCGTCACCACCCTTTCAGACGATGGTCCGGGATCCCTTCGCCAGGGGTGTCGTGAAAAGGAGCCACTGTGGATTGTTTTTGGAGTCTCTGGTACAATTCACCTTTCGTCGTACCTGAGTGTGTCATCTTACAAAACAATTGATGGCCGAGGGCAGAGGATAAAACTAACTGGAAAGGGTTTAAGGCTGAAAGAATGTGAGCACATAATTGTATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTCGACGGCATTCAGATAAAACCAAATTCCAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTACGACGATGGGCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCGCAGCATGACAAGACCATGCTGATTGGAGCTGATCCATCACATGTTGGTGATAGGTGCATCCGGGTAACAATTCATCATTGTTTCTTCGATGGAACACGGCAAAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAATTGGGCTATATATGCTATTTGTGCTAGCGTCGAATCTCAGATATACTCCCAGTGCAACATATACGAAGCAGGAGCTAAGAAGAAGACTTTTGAATTTTATACCGAGAAGGCGGCAGATAAGGAAGTGGCGAGGTCTGGCACAATTGTATCTGAAGGAGACATGCTTCTGAATGGTGCTCAGCCATGCTTACTAACACGAAACAATGAAGAAGCAATGTTCCATCCAAGTGAATACTATCCAACATGGACAATGGAATCAGCTGACCACTCTCTCAGAGAGATCCTCCAGTTGTGTTCAGGTTGGCAATCCATTGCTAGGCCAAAAGACAATCTGGTTCCCAATTAA 999 0.4615 MVSVLPYADVDSSLRALAGSAEGFGRHAIGGLHGSLYVVTTLSDDGPGSLRQGCREKEPLWIVFGVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWAIYAICASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEVARSGTIVSEGDMLLNGAQPCLLTRNNEEAMFHPSEYYPTWTMESADHSLREILQLCSGWQSIARPKDNLVPN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03943 332 SMART amb_all 47 245 IPR002022 -
Arst9g03943 332 Gene3D - 7 314 IPR012334 -
Arst9g03943 332 PANTHER PECTATE LYASE 18-RELATED 9 288 IPR045032 GO:0030570
Arst9g03943 332 Pfam Pectate lyase 76 238 IPR002022 -
Arst9g03943 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Arst9g03943 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Arst9g03943 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Arst9g03943 332 SUPERFAMILY Pectin lyase-like 18 280 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03943 Arst-Chr9 115004101 115006306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03943 44 332 Polysaccharide Lyase AT3G55140 81.661 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03943 K01728 - gmx:100802068 612.838