Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03890 ATGGATGAATGTATATATATTAGCTCATCAGATGATGACCTTGAGGAGATAGAAGATCCAAAAAGGAATCTCCCTCAATGGGCTGCTGCTGAAAGGAATTCAGATTATGGTGGACGGCCAAGGCACGATAGTTTTTCAAGAGGCACAAGTACTTCAGGTGCTAGCTCGTCCAATGTTAATAATACTCATTCCCAAATCAAGCTTCATGCTCAACCTGTATCTAGCAAAAATGGACTGAATCAGAGAGTTGCACGTCGAGAAGAACCTTCATATCATGCACAGAATGGAAACACAAGTCAGTCAACTCAACAGGCTTTCAAGCGGGCTCTTCCTCAAACTGTTCATCCATATACATCAAGGGTTCCACCATCTTCGTCGTTTGCACCTGATAGCAGATTAAGTAACTTAAAGGATAACATGAACAATAGTCAGTTTTTCGATACATATAGGAATCGTCCCCATGGAGTAGGACCTAGCACGATGAGCGACAAGGCCTACAACCGTGGCCCATTTATGAGGGGAAGTGATGAAGATCGCTTCATGAATCAAAATGGTGTGATTAGGGTTCTTCCTCCATCTTTGATGCATGGTAAGTCTGTACCTCCACAGTATGCTAGTTCCAGTGAACCTGCATTCCGCTCTGGTGCAGGTGATGAACGGGCTCCTGGAAGTGATGAGAGACTAATTTATGAGGCCATTGTGGAGGATCTCAGTCAAAATAGAATAGAAGTTGATGTACCTGAGGGTCACATGTGTGTCTCTCTTCTTAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGGATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTCACTGCAATCAAAATCTAAAACAGACGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGACGATGAGGATGATCGTGCTACTGTTGATTTGGAAAAGCTTGAAAATAAAGAAGAATCTGATGATGTAAAACCTAGTACAGAACCTAGTAGTTCAACACGAGCACCAAGTAGGAAAAGGCCGGCTGCTGGCACACTTGTTGTTTGCCCTGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAGACTTGCTGTTTTGGTTTATCACGGGGGCAGTAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTCCTCACAACATATGCTATTGTGACTAATGAAGTTCCAAAGCAGCCGTTGGTTGAGGAGGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGATATCCTCTGAATTTTCTGCCAGTAAAAAGAGGAAGCAGTTATTTAATGGAAGTAAGAAAAGTAAAAAGGGTAGAAAGGGATTAGACGAATCTTCAATTGAATCTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGTCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACACCTATTCAAAATACAATTGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCGTTCTACAATACAATAAAAGTTCCGATATCCAGAAATTCTATCCAAGGGTACAAGAAGCTTCAGGCAGTTCTGAGGGCCATTATGCTTCGCCGTACAAAAGGAACTTTGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTGAGCTGACTAAGGTGGATTTCTCCACTGAGGAGCGGGCCTTCTATATGCAGTTGGAAGCAGATTCACGTTCCCAATTTAAGGCCTATGCTGCTGCTGGCACGGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTGCGTCTTCGTCAAGCTTGTGATCACCCACGTCTTGTTAAAGATTATTATTCTGATCCTCTTGGGAAATCCTCTGTGGAAATGGCAAACTCACTTCCAAAGGAGATGTTGATTAATCTGTTTAATAGTTTGGAAACGACCTTTGCTATATGCTGTACTTGTGAGGATCCACCTGAAGACGCAGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGGCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAGTGAGTACAGTTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCATTCAAATTGTAAACTGAATAGTCGTAGCTCTGGTTTACTAAATTCTGGTGGAAGCCATAGAGGTTCGCCATCTGATGATGATTCATATATTGAAGATTGCGACTCAGATGTTAGGATTATGAAAAACACAAGAAAATATTCAGACTCCACAACTGTAGGACCAATAAAAGCTATAGTTTTTTCCCAATGGACTAGCATGTTGGACTTGGTTGAGGCATCATTGCAACAATCCTGTATGAAATATAGGAGACTTGATGGGCGGATGTCTCTGATTGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGCTTACTGTAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATCTGCTTTTGGGGAAGAACATGCTGGCAGTTCTGCGACTCGCCTTACAATGGATGATCTGAAATATCTTTTCATGGTGTAG 3024 0.415 MDECIYISSSDDDLEEIEDPKRNLPQWAAAERNSDYGGRPRHDSFSRGTSTSGASSSNVNNTHSQIKLHAQPVSSKNGLNQRVARREEPSYHAQNGNTSQSTQQAFKRALPQTVHPYTSRVPPSSSFAPDSRLSNLKDNMNNSQFFDTYRNRPHGVGPSTMSDKAYNRGPFMRGSDEDRFMNQNGVIRVLPPSLMHGKSVPPQYASSSEPAFRSGAGDERAPGSDERLIYEAIVEDLSQNRIEVDVPEGHMCVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRSLQSKSKTDDACNHKTEALNLDDEDDRATVDLEKLENKEESDDVKPSTEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELKEKVVEEQRLAVLVYHGGSRTKDPTELARYDVVLTTYAIVTNEVPKQPLVEEDDIDEKMGERFGISSEFSASKKRKQLFNGSKKSKKGRKGLDESSIESASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIELTKVDFSTEERAFYMQLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYYSDPLGKSSVEMANSLPKEMLINLFNSLETTFAICCTCEDPPEDAVVTMCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLADELGGSNSIKAHDFDHSLVQQSEYSSSKIKAVLEILHSNCKLNSRSSGLLNSGGSHRGSPSDDDSYIEDCDSDVRIMKNTRKYSDSTTVGPIKAIVFSQWTSMLDLVEASLQQSCMKYRRLDGRMSLIARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEEHAGSSATRLTMDDLKYLFMV 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03890 1007 Gene3D - 225 318 IPR038718 -
Arst9g03890 1007 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 347 436 - -
Arst9g03890 1007 Gene3D - 600 1006 IPR027417 -
Arst9g03890 1007 SMART ultradead3 251 564 IPR014001 -
Arst9g03890 1007 SMART helicmild6 866 949 IPR001650 -
Arst9g03890 1007 MobiDBLite consensus disorder prediction 146 167 - -
Arst9g03890 1007 Pfam SNF2-related domain 258 663 IPR000330 GO:0005524|GO:0140658
Arst9g03890 1007 Coils Coil 319 339 - -
Arst9g03890 1007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 270 547 IPR014001 -
Arst9g03890 1007 MobiDBLite consensus disorder prediction 198 222 - -
Arst9g03890 1007 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 465 597 - -
Arst9g03890 1007 ProSitePatterns Zinc finger RING-type signature. 716 725 IPR017907 -
Arst9g03890 1007 ProSiteProfiles Zinc finger RING-type profile. 701 737 IPR001841 -
Arst9g03890 1007 CDD SF2_C_SNF 854 959 - -
Arst9g03890 1007 MobiDBLite consensus disorder prediction 459 479 - -
Arst9g03890 1007 MobiDBLite consensus disorder prediction 1 107 - -
Arst9g03890 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1006 IPR027417 -
Arst9g03890 1007 SUPERFAMILY RING/U-box 698 747 - -
Arst9g03890 1007 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 823 1002 IPR001650 -
Arst9g03890 1007 MobiDBLite consensus disorder prediction 44 80 - -
Arst9g03890 1007 CDD DEXDc_SHPRH-like 255 585 - -
Arst9g03890 1007 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 58 1006 - -
Arst9g03890 1007 Pfam Zinc finger, C3HC4 type (RING finger) 701 737 IPR018957 GO:0046872
Arst9g03890 1007 Pfam Helicase conserved C-terminal domain 854 949 IPR001650 -
Arst9g03890 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 585 IPR027417 -
Arst9g03890 1007 Gene3D - 451 596 IPR038718 -
Arst9g03890 1007 MobiDBLite consensus disorder prediction 334 364 - -
Arst9g03890 1007 Gene3D - 352 441 IPR038718 -
Arst9g03890 1007 MobiDBLite consensus disorder prediction 91 107 - -
Arst9g03890 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 688 751 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03890 Arst-Chr9 114644599 114651429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03890 1 907 RAD5 or RAD16-like Gene Family AT1G50410 54.642 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g03890 SNF2_N 1.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03890 - - gmx:100795142 1513.43