Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03885 ATGCCCGACAATGGAGACCATATCCATGATTTTGTCAACTCAACTTGGAGATTTTGTTCTTCTTTAGGTGGTTGGATTTCGGGTTTAATATTGAAACCTTGCAAAAAAGTGGTTGGCATAGTATTTACGAGTTCTCTTTCTAGGTTGGCTGACGGAAAGGACAATTGTTATCCTGAGTTCATGGATGAATGTATATATATTAGCTCATCAGATGATGACCTTGAGGAGATAGAAGATCCAAAAAGGAATCTCCCTCAATGGGCTGCTGCTGAAAGGAATTCAGATTATGGTGGACGGCCAAGGCACGATAGTTTTTCAAGAGGCACAAGTACTTCAGGTGCTAGCTCGTCCAATGTTAATAATACTCATTCCCAAATCAAGCTTCATGCTCAACCTGTATCTAGCAAAAATGGACTGAATCAGAGAGTTGCACGTCGAGAAGAACCTTCATATCATGCACAGAATGGAAACACAAGTCAGTCAACTCAACAGGCTTTCAAGCGGGCTCTTCCTCAAACTGTTCATCCATATACATCAAGGGTTCCACCATCTTCGTCGTTTGCACCTGATAGCAGATTAAGTAACTTAAAGGATAACATGAACAATAGTCAGTTTTTCGATACATATAGGAATCGTCCCCATGGAGTAGGACCTAGCACGATGAGCGACAAGGCCTACAACCGTGGCCCATTTATGAGGGGAAGTGATGAAGATCGCTTCATGAATCAAAATGGTGTGATTAGGGTTCTTCCTCCATCTTTGATGCATGGTAAGTCTGTACCTCCACAGTATGCTAGTTCCAGTGAACCTGCATTCCGCTCTGGTGCAGGTGATGAACGGGCTCCTGGAAGTGATGAGAGACTAATTTATGAGGCCATTGTGGAGGATCTCAGTCAAAATAGAATAGAAGTTGATGTACCTGAGGGTCACATGTGTGTCTCTCTTCTTAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGGATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTCACTGCAATCAAAATCTAAAACAGACGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGACGATGAGGATGATCGTGCTACTGTTGATTTGGAAAAGCTTGAAAATAAAGAAGAATCTGATGATGTAAAACCTAGTACAGAACCTAGTAGTTCAACACGAGCACCAAGTAGGAAAAGGCCGGCTGCTGGCACACTTGTTGTTTGCCCTGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAGACTTGCTGTTTTGGTTTATCACGGGGGCAGTAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTCCTCACAACATATGCTATTGTGACTAATGAAGTTCCAAAGCAGCCGTTGGTTGAGGAGGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGATATCCTCTGAATTTTCTGCCAGTAAAAAGAGGAAGCAGTTATTTAATGGAAGTAAGAAAAGTAAAAAGGGTAGAAAGGGATTAGACGAATCTTCAATTGAATCTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGTCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACACCTATTCAAAATACAATTGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCGTTCTACAATACAATAAAAGTTCCGATATCCAGAAATTCTATCCAAGGGTACAAGAAGCTTCAGGCAGTTCTGAGGGCCATTATGCTTCGCCGTACAAAAGGAACTTTGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTGAGCTGACTAAGGTGGATTTCTCCACTGAGGAGCGGGCCTTCTATATGCAGTTGGAAGCAGATTCACGTTCCCAATTTAAGGCCTATGCTGCTGCTGGCACGGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTGCGTCTTCGTCAAGCTTGTGATCACCCACGTCTTGTTAAAGATTATTATTCTGATCCTCTTGGGAAATCCTCTGTGGAAATGGCAAACTCACTTCCAAAGGAGATGTTGATTAATCTGTTTAATAGTTTGGAAACGACCTTTGCTATATGCTGTACTTGTGAGGATCCACCTGAAGACGCAGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGGCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAATTGCGACTCAGATGCCAGGATTATGAAACAAACAAGAAAATATTCAGAGTCAACAACTGTAGGACCAATAAAGGCTATAGTTTTTTCCCAATGGACTAGAATGTTGGACTTAGTTGAGGCATCATTGCAACAATCCCCTATACAATACAGGAGACTTGATGGGACGATGTCTCTGATTGCTAGAGACAGATCTGTTAAAGATTTTAATACTGATCCCAAGGTAACTGTTATGCTGATGTCGCTAAAAGCAGGAAATCTTGGATTGAATATGGTTGCTGCGTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACAGTGACACGGCTCACTATAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGTATGCACTTTTGGTGAAGACCATGCCGGCAGCTCTGAGACTCGCCTTTCAGTGGATGATCTGAAATATCTTTTCGGTGTAGATTCTTAG 3069 0.4158 MPDNGDHIHDFVNSTWRFCSSLGGWISGLILKPCKKVVGIVFTSSLSRLADGKDNCYPEFMDECIYISSSDDDLEEIEDPKRNLPQWAAAERNSDYGGRPRHDSFSRGTSTSGASSSNVNNTHSQIKLHAQPVSSKNGLNQRVARREEPSYHAQNGNTSQSTQQAFKRALPQTVHPYTSRVPPSSSFAPDSRLSNLKDNMNNSQFFDTYRNRPHGVGPSTMSDKAYNRGPFMRGSDEDRFMNQNGVIRVLPPSLMHGKSVPPQYASSSEPAFRSGAGDERAPGSDERLIYEAIVEDLSQNRIEVDVPEGHMCVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRSLQSKSKTDDACNHKTEALNLDDEDDRATVDLEKLENKEESDDVKPSTEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELKEKVVEEQRLAVLVYHGGSRTKDPTELARYDVVLTTYAIVTNEVPKQPLVEEDDIDEKMGERFGISSEFSASKKRKQLFNGSKKSKKGRKGLDESSIESASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIELTKVDFSTEERAFYMQLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYYSDPLGKSSVEMANSLPKEMLINLFNSLETTFAICCTCEDPPEDAVVTMCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLADELGGSNSIKAHDFDHSLVQQNCDSDARIMKQTRKYSESTTVGPIKAIVFSQWTRMLDLVEASLQQSPIQYRRLDGTMSLIARDRSVKDFNTDPKVTVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVVCTFGEDHAGSSETRLSVDDLKYLFGVDS 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03885 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 645 IPR027417 -
Arst9g03885 1022 Pfam Helicase conserved C-terminal domain 866 962 IPR001650 -
Arst9g03885 1022 Gene3D - 412 501 IPR038718 -
Arst9g03885 1022 Gene3D - 660 1021 IPR027417 -
Arst9g03885 1022 Pfam SNF2-related domain 318 723 IPR000330 GO:0005524|GO:0140658
Arst9g03885 1022 MobiDBLite consensus disorder prediction 394 424 - -
Arst9g03885 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 811 IPR013083 -
Arst9g03885 1022 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 525 657 - -
Arst9g03885 1022 Pfam Zinc finger, C3HC4 type (RING finger) 761 797 IPR018957 GO:0046872
Arst9g03885 1022 Gene3D - 511 656 IPR038718 -
Arst9g03885 1022 SMART helicmild6 879 962 IPR001650 -
Arst9g03885 1022 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 330 607 IPR014001 -
Arst9g03885 1022 MobiDBLite consensus disorder prediction 206 227 - -
Arst9g03885 1022 MobiDBLite consensus disorder prediction 76 141 - -
Arst9g03885 1022 Coils Coil 379 399 - -
Arst9g03885 1022 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 116 1019 - -
Arst9g03885 1022 SUPERFAMILY RING/U-box 758 807 - -
Arst9g03885 1022 CDD SF2_C_SNF 867 972 - -
Arst9g03885 1022 MobiDBLite consensus disorder prediction 258 282 - -
Arst9g03885 1022 Gene3D - 285 378 IPR038718 -
Arst9g03885 1022 ProSiteProfiles Zinc finger RING-type profile. 761 797 IPR001841 -
Arst9g03885 1022 CDD DEXDc_SHPRH-like 315 645 - -
Arst9g03885 1022 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 849 1015 IPR001650 -
Arst9g03885 1022 MobiDBLite consensus disorder prediction 519 539 - -
Arst9g03885 1022 SMART ultradead3 311 624 IPR014001 -
Arst9g03885 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1021 IPR027417 -
Arst9g03885 1022 MobiDBLite consensus disorder prediction 104 140 - -
Arst9g03885 1022 ProSitePatterns Zinc finger RING-type signature. 776 785 IPR017907 -
Arst9g03885 1022 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 407 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03885 Arst-Chr9 114624675 114652789 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03885 61 920 RAD5 or RAD16-like Gene Family AT1G50410 53.376 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g03885 SNF2_N 1.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03885 - - lang:109335781 1440.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03885 9 114624675 114652789 Arst9g03885 9 114624675 114652789 ECH