Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03850 ATGTCGTCCGGCGAGGCCGTCGTCGGCGGAGCTAAGCCGTACTTCTGTCACGTTTGCACCCGGAGAATCACCGTCTCCGACGAATCCGAGCCTTTCTGTCCGATTTGCCTCCAAGGCTTCGTTGAAGAATTCACCGATCCCAACCCTAACCCTAACGAAAACATCTCCTTCAGTTTCGGCCCCGATCCTTCCTCCGATGCTCAACTCCCCTTCCATCCTTTGTCCTTCCTCCCTTTCCTGCTCTCCTCCGCCGCCGCCGCCTCCACCACCATCGACCTCCAGAACCCTCGCATCTTCTCCAGTTCCTCCGGATCCACGCCGCGACATGAATTTATTCGATCCGATATGTTCGACCCGTTTATGTTTCTCCAGAACCACCTCCAAGGCCTTCGCGCCGACGGAGCAAATGTACAATTCGAGATCAACCACCCTTCAGACCCAGGGTTTCGCCTTCCGGCGAACATCGGCGATTACTTCCTCGGTCCCGGCCTCGAGCAGTTGATTCAGCAGCTAGCCGAGAATGATCCCAACCGTTATGGTACCCCGCCGGCGTCGAAGACCGCCGTGGAGAATCTTCCGACGGTGACGGTGGACGACGAGTTGCTGAACTCTGAGCATAACCAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCAGGTGAGGCAGATGCCTTGTAAACACGTCTATCACGATGATTGCTTGCTTCCGTGGCTTCAACTACACAATTCTTGCCCTGTTTGCCGGTATGAATTGCCAACCGACGACCCTGATTATGAGAATCGGAATCGCCAGGGGGACGGTGGTGGTGATGGTTCGAGGTCTGGCGGTGGCGGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGACGCTTCTGGGGGTAGACCTGTTCCCAGGACTTTTAGGATATCTTTGCGATACCCGTTTGGTTCGGGTGGGTCTCCGCAGGAAAGTGGCGACAGAGGATGGGAAAGTAGGCAAGAAGATTTGGATTGA 999 0.5706 MSSGEAVVGGAKPYFCHVCTRRITVSDESEPFCPICLQGFVEEFTDPNPNPNENISFSFGPDPSSDAQLPFHPLSFLPFLLSSAAAASTTIDLQNPRIFSSSSGSTPRHEFIRSDMFDPFMFLQNHLQGLRADGANVQFEINHPSDPGFRLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKTAVENLPTVTVDDELLNSEHNQCAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDPDYENRNRQGDGGGDGSRSGGGGGGGGGGGGGGDASGGRPVPRTFRISLRYPFGSGGSPQESGDRGWESRQEDLD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03850 332 SUPERFAMILY RING/U-box 188 257 - -
Arst9g03850 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 256 IPR013083 -
Arst9g03850 332 SMART ring_2 209 249 IPR001841 -
Arst9g03850 332 Pfam zinc-ribbon 13 43 IPR039525 GO:0061630
Arst9g03850 332 MobiDBLite consensus disorder prediction 254 268 - -
Arst9g03850 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 105 254 - -
Arst9g03850 332 MobiDBLite consensus disorder prediction 253 332 - -
Arst9g03850 332 Pfam Ring finger domain 207 250 IPR001841 -
Arst9g03850 332 FunFam E3 ubiquitin-protein ligase RING1-like 170 256 - -
Arst9g03850 332 CDD RING-H2_RNF126-like 208 250 - -
Arst9g03850 332 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03850 Arst-Chr9 114414577 114416993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03850 153 265 C3H Transcription Factor Family AT5G01980 48.673 1.59e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03850 K11982 - gmx:100785289 363.999