Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03815 ATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCCGCAACAGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAAAATAGTGCTGGTTCCGTCTACTTACGGTTCGAAAATACTCAATCCGCAATAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1035 0.4512 MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSAGSVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03815 344 Gene3D - 1 52 IPR012677 -
Arst9g03815 344 Gene3D - 53 154 IPR012677 -
Arst9g03815 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Arst9g03815 344 Gene3D - 245 344 IPR012677 -
Arst9g03815 344 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 343 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst9g03815 344 SMART rrm1_1 73 145 IPR000504 GO:0003723
Arst9g03815 344 SMART rrm1_1 251 329 IPR000504 GO:0003723
Arst9g03815 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 326 IPR000504 GO:0003723
Arst9g03815 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Arst9g03815 344 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 163 268 IPR029123 -
Arst9g03815 344 NCBIfam splicing factor, CC1-like family 1 342 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst9g03815 344 CDD RRM3_RBM39_like 249 331 - -
Arst9g03815 344 SMART rrm2_1 251 329 IPR003954 GO:0003676
Arst9g03815 344 SMART rrm2_1 73 145 IPR003954 GO:0003676
Arst9g03815 344 FunFam CC1-like, splicing factor 67 175 - -
Arst9g03815 344 FunFam Splicing factor, CC1-like protein 245 344 - -
Arst9g03815 344 SUPERFAMILY RNA-binding domain, RBD 72 336 IPR035979 GO:0003676
Arst9g03815 344 SUPERFAMILY RNA-binding domain, RBD 1 49 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03815 Arst-Chr9 114125558 114130686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03815 2 135 Eukaryotic Initiation Factors Gene Family AT4G34110 30.882 4.69e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03815 K13091 - gmx:100789839 563.918