Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03814 ATGTTCTGCATAAGACATAAAGAGAAAAAGGAAGAGGCAGCAGAACCCGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCGGGCAAGGTGCGAGATGTTCGGTTAATTATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCCGCAACAGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAAAATAGTGCTGGTTCCGTCTACTTACGGTTCGAAAATACTCAATCCGCAATAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1206 0.4478 MFCIRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSAGSVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03814 401 Coils Coil 400 401 - -
Arst9g03814 401 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 220 325 IPR029123 -
Arst9g03814 401 MobiDBLite consensus disorder prediction 1 20 - -
Arst9g03814 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Arst9g03814 401 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 5 400 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst9g03814 401 FunFam Splicing factor, CC1-like protein 302 401 - -
Arst9g03814 401 FunFam CC1-like, splicing factor 124 232 - -
Arst9g03814 401 CDD RRM1_RBM39_like 26 98 - -
Arst9g03814 401 SMART rrm1_1 130 202 IPR000504 GO:0003723
Arst9g03814 401 SMART rrm1_1 26 98 IPR000504 GO:0003723
Arst9g03814 401 SMART rrm1_1 308 386 IPR000504 GO:0003723
Arst9g03814 401 SUPERFAMILY RNA-binding domain, RBD 129 393 IPR035979 GO:0003676
Arst9g03814 401 Gene3D - 111 211 IPR012677 -
Arst9g03814 401 Gene3D - 4 110 IPR012677 -
Arst9g03814 401 SUPERFAMILY RNA-binding domain, RBD 20 108 IPR035979 GO:0003676
Arst9g03814 401 Gene3D - 302 401 IPR012677 -
Arst9g03814 401 NCBIfam splicing factor, CC1-like family 6 399 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst9g03814 401 FunFam RNA-binding protein 39 isoform X1 18 110 - -
Arst9g03814 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 94 IPR000504 GO:0003723
Arst9g03814 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Arst9g03814 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 383 IPR000504 GO:0003723
Arst9g03814 401 CDD RRM3_RBM39_like 306 388 - -
Arst9g03814 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 206 IPR000504 GO:0003723
Arst9g03814 401 SMART rrm2_1 308 386 IPR003954 GO:0003676
Arst9g03814 401 SMART rrm2_1 130 202 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03814 Arst-Chr9 114125558 114130789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03814 26 192 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 5.06e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03814 K13091 - gmx:100789839 650.588