Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03813 ATGGCAGGAGTGGAGGTTTCAAATCAGAAGAGAAAGGGTATAGTAGGAGTTCCAGGCATAAGGATGATCGTGATGGTGATGATGATAATGATAATGATGTGGATCACCGCTCTAAGCATTCAAAATCTGGCGATGGTTCTCGTGGTGATTACGATAAGCACAAGGAAAGAGGCTCGTCGCATCGTCACTCCCGGTCCAGAGATGGAAACAAGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAAGGACAGAGATGATGAGGACAAGTATGGAAGGGAGCGAGACAGAGAACGTGACCGTGAAAGGGACAGGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCGTAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGTCGTGACAGGGAGCATAGAGACAGTGAAAGGAGCCGGGATAAGGATTACAGAGACAGGGAAAGGGCAAGGGAATCCAGGGAACGGGATAGAGAAAGCAGGTCCCTCAAACCTTCGTACTGCTATCAATCCAAATTGGCGATGCTGTTTCAATATAAGATTTTGTTTTATTTGTAGAAGAAGACATAAAGAGAAAAAGGAAGAGGCAGCAGAACCCGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCGGGCAAGGTGCGAGATGTTCGGTTAATTATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCCGCAACAGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAAAATAGTGCTGGTTCCGTCTACTTACGGTTCGAAAATACTCAATCCGCAATAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1785 0.4571 MAGVEVSNQKRKGIVGVPGIRMIVMVMMIMIMMWITALSIQNLAMVLVVITISTRKEARRIVTPGPEMETRRRMSIEALGAAGMGREIRTEMMRTSMEGSETENVTVKGTGRKRAHGEAEVNPKGVRVILMTEKERGVVTGSIETVKGAGIRITETGKGQGNPGNGIEKAGPSNLRTAINPNWRCCFNIRFCFICRRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSAGSVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03813 594 Gene3D - 495 594 IPR012677 -
Arst9g03813 594 FunFam RNA-binding protein 39 isoform X1 211 303 - -
Arst9g03813 594 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 413 518 IPR029123 -
Arst9g03813 594 NCBIfam splicing factor, CC1-like family 196 592 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst9g03813 594 MobiDBLite consensus disorder prediction 95 119 - -
Arst9g03813 594 SUPERFAMILY RNA-binding domain, RBD 213 299 IPR035979 GO:0003676
Arst9g03813 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 287 IPR000504 GO:0003723
Arst9g03813 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 524 576 IPR000504 GO:0003723
Arst9g03813 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 393 IPR000504 GO:0003723
Arst9g03813 594 CDD RRM3_RBM39_like 499 581 - -
Arst9g03813 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Arst9g03813 594 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 184 593 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst9g03813 594 FunFam Splicing factor, CC1-like protein 495 594 - -
Arst9g03813 594 SUPERFAMILY RNA-binding domain, RBD 322 586 IPR035979 GO:0003676
Arst9g03813 594 SMART rrm2_1 501 579 IPR003954 GO:0003676
Arst9g03813 594 SMART rrm2_1 323 395 IPR003954 GO:0003676
Arst9g03813 594 Gene3D - 304 404 IPR012677 -
Arst9g03813 594 Gene3D - 195 303 IPR012677 -
Arst9g03813 594 FunFam CC1-like, splicing factor 317 425 - -
Arst9g03813 594 CDD RRM1_RBM39_like 219 291 - -
Arst9g03813 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Arst9g03813 594 SMART rrm1_1 219 291 IPR000504 GO:0003723
Arst9g03813 594 SMART rrm1_1 323 395 IPR000504 GO:0003723
Arst9g03813 594 SMART rrm1_1 501 579 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03813 Arst-Chr9 114125558 114132539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03813 219 385 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 1.12e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03813 K13091 - gmx:100789839 647.891