Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03812 ATGGCAGGAGTGGAGGTTTCAAATCAGAAGAGAAAGGGTATAGTAGGAGTTCCAGGCATAAGGATGATCGTGATGGTGATGATGATAATGATAATGATGTGGATCACCGCTCTAAGCATTCAAAATCTGGCGATGGTTCTCGTGGTGATTACGATAAGCACAAGGAAAGAGGCTCGTCGCATCGTCACTCCCGGTCCAGAGATGGAAACAAGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAAGGACAGAGATGATGAGGACAAGTATGGAAGGGAGCGAGACAGAGAACGTGACCGTGAAAGGGACAGGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCGTAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGTCGTGACAGGGAGCATAGAGACAGTGAAAGGAGCCGGGATAAGGATTACAGAGACAGGGAAAGGGCAAGGGAATCCAGGGAACGGGATAGAGAAAGCAGGTCCCTCAAACCTTCGTACTGCTATCAATCCAAATTGGCGATGCTGTTTCAATATAAGATTTTGTTTTATTTGTAGAAGACATAAAGAGAAAAAGGAAGAGGCAGCAGAACCCGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCGGGCAAGGTGCGAGATGTTCGGTTAATTATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCCGCAACAGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAAAATAGTGCTGGTTCCGTCTACTTACGGTTCGAAAATACTCAATCCGCAATAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1782 0.4574 MAGVEVSNQKRKGIVGVPGIRMIVMVMMIMIMMWITALSIQNLAMVLVVITISTRKEARRIVTPGPEMETRRRMSIEALGAAGMGREIRTEMMRTSMEGSETENVTVKGTGRKRAHGEAEVNPKGVRVILMTEKERGVVTGSIETVKGAGIRITETGKGQGNPGNGIEKAGPSNLRTAINPNWRCCFNIRFCFICRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSAGSVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03812 593 CDD RRM1_RBM39_like 218 290 - -
Arst9g03812 593 SMART rrm1_1 322 394 IPR000504 GO:0003723
Arst9g03812 593 SMART rrm1_1 218 290 IPR000504 GO:0003723
Arst9g03812 593 SMART rrm1_1 500 578 IPR000504 GO:0003723
Arst9g03812 593 SMART rrm2_1 500 578 IPR003954 GO:0003676
Arst9g03812 593 SMART rrm2_1 322 394 IPR003954 GO:0003676
Arst9g03812 593 MobiDBLite consensus disorder prediction 95 119 - -
Arst9g03812 593 Gene3D - 195 302 IPR012677 -
Arst9g03812 593 Gene3D - 303 403 IPR012677 -
Arst9g03812 593 SUPERFAMILY RNA-binding domain, RBD 212 298 IPR035979 GO:0003676
Arst9g03812 593 SUPERFAMILY RNA-binding domain, RBD 321 585 IPR035979 GO:0003676
Arst9g03812 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723
Arst9g03812 593 Gene3D - 494 593 IPR012677 -
Arst9g03812 593 FunFam CC1-like, splicing factor 316 424 - -
Arst9g03812 593 FunFam RNA-binding protein 39 isoform X1 210 302 - -
Arst9g03812 593 CDD RRM3_RBM39_like 498 580 - -
Arst9g03812 593 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 412 517 IPR029123 -
Arst9g03812 593 FunFam Splicing factor, CC1-like protein 494 593 - -
Arst9g03812 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 294 IPR000504 GO:0003723
Arst9g03812 593 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 178 592 IPR006509 GO:0003723|GO:0005634|GO:0006397
Arst9g03812 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 286 IPR000504 GO:0003723
Arst9g03812 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 523 575 IPR000504 GO:0003723
Arst9g03812 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 392 IPR000504 GO:0003723
Arst9g03812 593 NCBIfam splicing factor, CC1-like family 196 591 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03812 Arst-Chr9 114125558 114132539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03812 218 384 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 1.06e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03812 K13091 - gmx:100789839 652.514