Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Arst9g03811 | ATGATGGACTTCGATGAATATGAGTACTTAGAGAAAGCAGTTGAGAATCCCGAGCTTAGGAAGGAGAAGGAAGCCACTAATGGCAGGAGTGGAGGTTTCAAATCAGAAGAGAAAGGGTATAGTAGGAGTTCCAGGCATAAGGATGATCGTGATGGTGATGATGATAATGATAATGATGTGGATCACCGCTCTAAGCATTCAAAATCTGGCGATGGTTCTCGTGGTGATTACGATAAGCACAAGGAAAGAGGCTCGTCGCATCGTCACTCCCGGTCCAGAGATGGAAACAAGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAAGGACAGAGATGATGAGGACAAGTATGGAAGGGAGCGAGACAGAGAACGTGACCGTGAAAGGGACAGGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCGTAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGTCGTGACAGGGAGCATAGAGACAGTGAAAGGAGCCGGGATAAGGATTACAGAGACAGGGAAAGGGCAAGGGAATCCAGGGAACGGGATAGAGAAAGCAGAAGACATAAAGAGAAAAAGGAAGAGGCAGCAGAACCCGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCGGGCAAGGTGCGAGATGTTCGGTTAATTATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCCGCAACAGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAAAATAGTGCTGGTTCCGTCTACTTACGGTTCGAAAATACTCAATCCGCAATAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA | 1785 | 0.4605 | MMDFDEYEYLEKAVENPELRKEKEATNGRSGGFKSEEKGYSRSSRHKDDRDGDDDNDNDVDHRSKHSKSGDGSRGDYDKHKERGSSHRHSRSRDGNKEKDEHRSSRSSRDGKRDKDRDDEDKYGRERDRERDRERDREKESSRRSRSQSERRKSDPDDRERERSRDREHRDSERSRDKDYRDRERARESRERDRESRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSAGSVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR | 594 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Arst9g03811 | 594 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 413 | 518 | IPR029123 | - | |
Arst9g03811 | 594 | NCBIfam | splicing factor, CC1-like family | 104 | 592 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Arst9g03811 | 594 | FunFam | RNA-binding protein 39 isoform X1 | 211 | 303 | - | - | |
Arst9g03811 | 594 | SUPERFAMILY | RNA-binding domain, RBD | 213 | 299 | IPR035979 | GO:0003676 | |
Arst9g03811 | 594 | CDD | RRM3_RBM39_like | 499 | 581 | - | - | |
Arst9g03811 | 594 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 322 | 399 | IPR000504 | GO:0003723 | |
Arst9g03811 | 594 | FunFam | Splicing factor, CC1-like protein | 495 | 594 | - | - | |
Arst9g03811 | 594 | SUPERFAMILY | RNA-binding domain, RBD | 322 | 586 | IPR035979 | GO:0003676 | |
Arst9g03811 | 594 | SMART | rrm2_1 | 501 | 579 | IPR003954 | GO:0003676 | |
Arst9g03811 | 594 | SMART | rrm2_1 | 323 | 395 | IPR003954 | GO:0003676 | |
Arst9g03811 | 594 | Gene3D | - | 495 | 594 | IPR012677 | - | |
Arst9g03811 | 594 | Gene3D | - | 303 | 404 | IPR012677 | - | |
Arst9g03811 | 594 | Gene3D | - | 150 | 302 | IPR012677 | - | |
Arst9g03811 | 594 | FunFam | CC1-like, splicing factor | 317 | 425 | - | - | |
Arst9g03811 | 594 | MobiDBLite | consensus disorder prediction | 1 | 215 | - | - | |
Arst9g03811 | 594 | CDD | RRM1_RBM39_like | 219 | 291 | - | - | |
Arst9g03811 | 594 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 2 | 593 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Arst9g03811 | 594 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 218 | 295 | IPR000504 | GO:0003723 | |
Arst9g03811 | 594 | SMART | rrm1_1 | 219 | 291 | IPR000504 | GO:0003723 | |
Arst9g03811 | 594 | SMART | rrm1_1 | 323 | 395 | IPR000504 | GO:0003723 | |
Arst9g03811 | 594 | SMART | rrm1_1 | 501 | 579 | IPR000504 | GO:0003723 | |
Arst9g03811 | 594 | Coils | Coil | 185 | 205 | - | - | |
Arst9g03811 | 594 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 228 | 287 | IPR000504 | GO:0003723 | |
Arst9g03811 | 594 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 524 | 576 | IPR000504 | GO:0003723 | |
Arst9g03811 | 594 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 324 | 393 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Arst9g03811 | Arst-Chr9 | 114125558 | 114132539 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Arst9g03811 | 219 | 385 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.811 | 1.31e-11 | 65.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Arst9g03811 | K13091 | - | gmx:100789839 | 702.205 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Arst9g03811 | 9 | 114125558 | 114132539 | Arst9g03811 | 9 | 114125558 | 114132539 | ECH |