Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03793 ATGCTCAAACATGAGGCACGAGGAACAGTTGCCACAAGTCTGGTTGAGCAAGGAATCATAGAAGTTGGTGATGATGTTGACATTTTGAGTCTAATGCAGTGGCGTGGCAAGGCTATAATCCCTATCCACTTCTCAGCTATTATCTTCAATAAAACTGATCTTCAGACTCTGAAAATATCAAGTAAATTTACAAGGAGATATGGAGGTGGTTTGTCGAATCCATTGTTTTTGAAGCCTCCAGATGGCACCAAATGGGAAGTGAATTGGACTAGAAAAAATGATGATGAGGTTTGGTTCCAAAAGGGTTGGAACAAATTCACTGAAAACTACTCCTTAGATCATGGCCACTTGATTCTTTTCACCTATCATGGAAATTCACAACTTGATGTTCACATCTTTGACAAATCTGCCTCTGAAATACTCTATCCGGGGTTAAAGTTAAACACTACTCCTACTACTACTGCTTGTGATGATGAAAAGAACATCAAACTTGATCTCATGCACAATGATGATGATGATGATGACTCCATTGAGATTTTGAAGCCTTGTAAACACAAACGCAGCATGCTAGTGTTGGTTCCTCAACCTTGTAATAAAAGAATGAAAGATGAGAAGAAGAAGGTTGCTGAAAGAAGATCAAGTTGTTCATCATTGAATTGGCCAAAGCAAGAAAGAGCACAGGAAGTAGCTATGAACTTCGTGTCTGATAATCCTTTCTTCACAATGTTCATAACCCATGTCCATCTAGCACACTACAAAGCGGGTGTGCCAAACATGAAAGAGTATACTGATGAGGATGAGAAGGATGTGGAGCTGAAAATTGGGGAGAAATCGTGGAAAGTCAAACTGAGGCGTGGTAGCAACTCTTCAAATTGTCGGTACTTGGGTGGTGGATGGTCCTTGTTTGCAGATGAGAGTGAATTGCTTCCTGGAGATGTTTGTGTCTTTGAGCTCATCAACATTCATCCTTTGCAGTTTAGGGTTCATATTTTCAAAAAGCAGCAGAGCTGCAAGCATTCGCCTAATCAAATCAAATCAAATAATGATGACACTCGATTTTGGAGTAGAAAACAGAAAATACCCGACAAATTTGCACTGAAATATGGAAGTGGTTTGTCCAATCCAGTGTCCTTAAAGCCTCCAGATGGAACAAGGTGGAATGTGTGTTTGAGAAAAAAGAATGATCAAGTTTGGTTTGAAAAAGGTTGGAAAGAATTCACTCAAAAGTACTCTCTGAATCATGGATGCTTGGTTCTGTTTAAATACGAAGGAACTACTTCCCAATTTGATGTCATTATCATTGATGACGGTGCTTTAGAAATGGACTATTCTTCCTACAATGGAAATGATAACGATGATGTTTCAGTTCAGATTGTAAAGGAAATCCATCCATGCAAGAAGAACAAAAAAACCATGAGAGATGAGAAGGATGTGACTACTTCTTTGTCATTGAATTGGCCAAGGGAACCAAGAGCACGACAAGAAGCTAACAAATTCGTATCTAACAACCCTTTTTTTACTGTGCTCATAAAGCCTCCTCATATCACAGAATACCGACTGTGCATACCAGGTTTGGAAGGTTATGTGGATAATGGAGTGAAGAATGTGAAGCTTGAGTATGGGGATAGATCGTGGCCTGTGAAGATGCTTAATTGTAACAAAACCTATTCAAATCGCTTCCTTTCTGCTGGGTGGAACTTGTTTGCACAAGAGAATGAGTTGAAGCCTGGAGATGTTTGTGTCTTTGAACTTGTTAATATGCAAGATTTGGTCTTTAAGGTTCATGTTTTTGCTGCCCATCATGTTTAA 1809 0.393 MLKHEARGTVATSLVEQGIIEVGDDVDILSLMQWRGKAIIPIHFSAIIFNKTDLQTLKISSKFTRRYGGGLSNPLFLKPPDGTKWEVNWTRKNDDEVWFQKGWNKFTENYSLDHGHLILFTYHGNSQLDVHIFDKSASEILYPGLKLNTTPTTTACDDEKNIKLDLMHNDDDDDDSIEILKPCKHKRSMLVLVPQPCNKRMKDEKKKVAERRSSCSSLNWPKQERAQEVAMNFVSDNPFFTMFITHVHLAHYKAGVPNMKEYTDEDEKDVELKIGEKSWKVKLRRGSNSSNCRYLGGGWSLFADESELLPGDVCVFELINIHPLQFRVHIFKKQQSCKHSPNQIKSNNDDTRFWSRKQKIPDKFALKYGSGLSNPVSLKPPDGTRWNVCLRKKNDQVWFEKGWKEFTQKYSLNHGCLVLFKYEGTTSQFDVIIIDDGALEMDYSSYNGNDNDDVSVQIVKEIHPCKKNKKTMRDEKDVTTSLSLNWPREPRARQEANKFVSNNPFFTVLIKPPHITEYRLCIPGLEGYVDNGVKNVKLEYGDRSWPVKMLNCNKTYSNRFLSAGWNLFAQENELKPGDVCVFELVNMQDLVFKVHVFAAHHV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03793 602 SMART B3_2 505 598 IPR003340 GO:0003677
Arst9g03793 602 SMART B3_2 344 437 IPR003340 GO:0003677
Arst9g03793 602 SMART B3_2 49 136 IPR003340 GO:0003677
Arst9g03793 602 SMART B3_2 239 334 IPR003340 GO:0003677
Arst9g03793 602 SUPERFAMILY DNA-binding pseudobarrel domain 235 333 IPR015300 -
Arst9g03793 602 CDD B3_DNA 505 597 IPR003340 GO:0003677
Arst9g03793 602 ProSiteProfiles B3 DNA-binding domain profile. 42 136 IPR003340 GO:0003677
Arst9g03793 602 SUPERFAMILY DNA-binding pseudobarrel domain 48 143 IPR015300 -
Arst9g03793 602 CDD B3_DNA 360 435 IPR003340 GO:0003677
Arst9g03793 602 Gene3D - 343 437 IPR015300 -
Arst9g03793 602 Gene3D - 41 137 IPR015300 -
Arst9g03793 602 SUPERFAMILY DNA-binding pseudobarrel domain 501 598 IPR015300 -
Arst9g03793 602 Pfam B3 DNA binding domain 261 333 IPR003340 GO:0003677
Arst9g03793 602 Pfam B3 DNA binding domain 358 429 IPR003340 GO:0003677
Arst9g03793 602 Pfam B3 DNA binding domain 505 598 IPR003340 GO:0003677
Arst9g03793 602 Pfam B3 DNA binding domain 54 135 IPR003340 GO:0003677
Arst9g03793 602 CDD B3_DNA 57 134 IPR003340 GO:0003677
Arst9g03793 602 Gene3D - 219 337 IPR015300 -
Arst9g03793 602 Gene3D - 487 601 IPR015300 -
Arst9g03793 602 ProSiteProfiles B3 DNA-binding domain profile. 360 437 IPR003340 GO:0003677
Arst9g03793 602 ProSiteProfiles B3 DNA-binding domain profile. 277 334 IPR003340 GO:0003677
Arst9g03793 602 CDD B3_DNA 268 332 IPR003340 GO:0003677
Arst9g03793 602 PANTHER B3 DOMAIN-CONTAINING 268 350 - -
Arst9g03793 602 SUPERFAMILY DNA-binding pseudobarrel domain 356 435 IPR015300 -
Arst9g03793 602 ProSiteProfiles B3 DNA-binding domain profile. 505 600 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03793 Arst-Chr9 113987990 114016636 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03793 491 597 B3 DNA Binding Superfamily AT3G18990 39.286 7.57e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Arst9g03793 B3 5.3e-11 CL0405