LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst9g03621	ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCCTCAACTTTTCACTCAGTTTTCTACCAAGACAAACAGAGTGATGACATCATTGATCTTGGTCTTAGCCTCAAAACTGTTCAACATGAGGCTTCACATTCTTCTGCCAACTTGTATGATGATGATATTATGGATTGGCCTCACTCTAATCTCAACCTGAAGAACTCAAGCAAGAACTTTGATGAAGAGATAGAGGGAGTCCAGAGCAATGAGAGATGGGCATATGTGAAGGTGAATATGGATAGGGTTACAATTGGTAGGAAAATTTGCATACTTGATCATGGAGGATACTCAAGTCTAGCTATCCAATTAGAAGACATGTTTGGAAGCCAAAGCCTCTCAGGTCTAAGATTGTTCCAACCTGATTCAGAGTACTCATTATTCTACAAAGACAGAGAAGATAATTGGAGGAGTGTAGGTGATGTGCCATGGAAAGAGTTTGTAGAATGTGTGAAGAGATTAAGGATTGCAAAAAGGAATGCAGGCCTTGCTTCCTGTTCATCCAGATACATCTAA	549	0.3953	MDSNTSSFLLNSSTFHSVFYQDKQSDDIIDLGLSLKTVQHEASHSSANLYDDDIMDWPHSNLNLKNSSKNFDEEIEGVQSNERWAYVKVNMDRVTIGRKICILDHGGYSSLAIQLEDMFGSQSLSGLRLFQPDSEYSLFYKDREDNWRSVGDVPWKEFVECVKRLRIAKRNAGLASCSSRYI	182

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst9g03621	182	ProSiteProfiles	PB1 domain profile.	84	172	IPR000270	GO:0005515
	Arst9g03621	182	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	30	171	IPR003311	GO:0005634\|GO:0006355
	Arst9g03621	182	Gene3D	-	78	179	-	-
	Arst9g03621	182	Pfam	AUX/IAA family	61	170	IPR033389	-
	Arst9g03621	182	SUPERFAMILY	CAD & PB1 domains	84	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst9g03621	Arst-Chr9	112492322	112493545	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst9g03621	79	167	B3 DNA Binding Superfamily	AT1G19220	36.667	1.89e-09	54.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Arst9g03621		AUX_IAA	2.8e-21	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst9g03621	K14484		-	gmx:100777024	305.834

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst9g03621	9	112492322	112493545	Arst9g03621	9	112492322	112493545	ECH