Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03447 ATGGCTTTGGAGGCTCTGAACTCTCCTACAGCTGCAGGAATCACTCCTTTCATTGCAAAGTTCCAAGATCAAGAAGAAGAAGAAGAAGAGCTTCATCAGCTGCGTGAGCCGTGGGCCAAGAGGAAGCGATCAAAACGACCGCGTTTCGAGAACCCTCCCACCGAAGAAGAGTACCTGGCTCTCTGCCTCATCATGTTAGCTCACAGCGGCAACAAGGTCACTGCCACTACTCTTAAGAACGAACAAACAGAGTCTTCATCTTCACAGCAACCACAAGAAGGATCATCGTCGCCGGCTCCGGAGATCAAGCTTACTCACAGGTGCACCGTCTGCAACAAGGCCTTCCCTTCTTACCAAGCACTCGGCGGACACAAGGCCAGCCACCGCAAATCATCCAATTCTGAAAACAACACCGCCGCCGCCACCGCCACAGCAGCTGCAGTCAACAGCGAAAACGTGTCGCTGCCACTACGAAGGTGGCAACAACCACCACCACAACAACAACAACAACAATAGCAGCGCAGTGGCATCTTCCGAGGGCGGCGGCACCTCCTCTCAGAGCTTCCGTGGCTTTGACCTCAACCTGCCCGCTCCCCTGACCGAATACTGGTCGCCGGCGGCTCTTGATGACGTCAGCGAAGCGAAGACAAAGAACAAGAAGAAGAAGGTCGAAGAGCAAGAAGTGGAAAGCCCTCTGCCGGTAGCCGCCGCGAAGAGGGCGCGTTTGTTTGAAGACGCTGATCAGAACTAA 751 0.5446 MALEALNSPTAAGITPFIAKFQDQEEEEEELHQLREPWAKRKRSKRPRFENPPTEEEYLALCLIMLAHSGNKVTATTLKNEQTESSSSQQPQEGSSSPAPEIKLTHRCTVCNKAFPSYQALGGHKASHRKSSNSENNTAAATATAAAVNSENVSASATTNGGPRMHECSICHKSFPTGQALGGHKRCHYEGGNNHHHNNNNNNSSAVASSEGGGTSSQSFRGFDLNLPAPLTEYWSPAALDDVSEAKTKNKKKKVEEQEVESPLPVAAAKRARLFEDADQN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03447 281 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 40 229 IPR044653 GO:0003700
Arst9g03447 281 MobiDBLite consensus disorder prediction 79 99 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 23 53 - -
Arst9g03447 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Arst9g03447 281 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Arst9g03447 281 Pfam C2H2-type zinc finger 106 130 - -
Arst9g03447 281 Pfam C2H2-type zinc finger 166 189 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 194 221 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 132 160 - -
Arst9g03447 281 SMART c2h2final6 106 128 IPR013087 -
Arst9g03447 281 SMART c2h2final6 166 188 IPR013087 -
Arst9g03447 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 188 IPR013087 -
Arst9g03447 281 MobiDBLite consensus disorder prediction 79 100 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 244 260 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 186 221 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 243 281 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 23 37 - -
Arst9g03447 281 MobiDBLite consensus disorder prediction 122 160 - -
Arst9g03447 281 Gene3D Classic Zinc Finger 104 188 - -
Arst9g03447 281 SUPERFAMILY beta-beta-alpha zinc fingers 106 188 IPR036236 -
Arst9g03447 281 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03447 Arst-Chr9 111365814 111367086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03447 1 280 C2H2 Transcription Factor Family AT3G19580 38.835 1.59e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Arst9g03447 zf-C2H2_6 2.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03447 - - aip:107618861 380.178