Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03445 ATGGCAACTGCAGTTACGCCGGCGTCGCTCGGCCGAGAGCTGTCGGATCCTCCGTCCGACGGAATCTCCAACCTCCGCTTCTCCAACCACAGCGATCTCCTCCTCGTCTCCTCTTGGGATAAGAGCGTGCGCTTGTACGATGCCAGCGCCAATGTGCTCAAGGCTGAGTTCATGCACGGCGGCCCCGTTCTCGATTGCTGCTTTCACGATGACTCTTCCGGCTTCAGCGCTGCCGGCGACAACACCGTCAGGCGCCTCCTCTTCGCCTCTAACAAGGACGACATCCTCGGAAAGCAATGCTCACCATTTGGTAGAGCTGTCATACTTGTATCTGAAATTTTCGACATGTTTTCGTTCATTTTAATCATTGTGTTTCATTCTTTTCTTTTCTTTTCCTTTTTCACAATAGGGCAATTGATCACTGGTAGTTGGGATAAAACCCTGAAGTGCTGGGACCCTAGGGGTGCAAGTGGACAGGAGCGCACTCTGGTTGGGACATATCCACAACCTGAGCGCGTTTACTCCCTATCTCTTGTTGGACATCGGCTAGTTGTAGCAACGGCTGGAAGGCATGTCAATATTTATGATTTGAGGAACATGTCTCAACCCGAGCAACGGAGAGAATCTTCATTGAAATATCAAACTAGATGTGTGCGCTGCTACCCTAATGGAACAGGATATGCACTTAGTTCTGTGGAAGGACGGGTTGCAATGGAATTCTTTGACCTCTCCGATGCTAGCCAAGCAAAAAAATATGCCTTTAAGTGCCACCGAAAATCAGAAGCTGGAAGGGACATCGTCTATCCTGTAAATGCTATTGCATTCCATCCCGTATATGGTACGTTTGCCACAGGAGGCTGTGATGGTTATGTTAATGTTTGGGATGGAAACAACAAGAAGAGGCTATACCAGTACTCAAAGTATCCAACAAGCATTGCTGCACTTTCATTTAGCAGAGATGGGCGGCTCCTGGCTGTTGCATCAAGTTATACATACGAAGAGGGGCTTAAACCCCATGATAAAGATGCCATATACATCCGCGGTGTAAACGAGATTGAGGTCAAGCCAAAACCCAAGGTCCTTCCTCCAGCTTGA 1095 0.4858 MATAVTPASLGRELSDPPSDGISNLRFSNHSDLLLVSSWDKSVRLYDASANVLKAEFMHGGPVLDCCFHDDSSGFSAAGDNTVRRLLFASNKDDILGKQCSPFGRAVILVSEIFDMFSFILIIVFHSFLFFSFFTIGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSDASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPVYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTYEEGLKPHDKDAIYIRGVNEIEVKPKPKVLPPA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03445 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 304 IPR001680 GO:0005515
Arst9g03445 364 Gene3D - 11 360 IPR015943 GO:0005515
Arst9g03445 364 PANTHER MRNA EXPORT FACTOR AND BUB3 13 351 - -
Arst9g03445 364 SUPERFAMILY WD40 repeat-like 17 329 IPR036322 GO:0005515
Arst9g03445 364 SMART WD40_4 7 47 IPR001680 GO:0005515
Arst9g03445 364 SMART WD40_4 160 196 IPR001680 GO:0005515
Arst9g03445 364 SMART WD40_4 118 152 IPR001680 GO:0005515
Arst9g03445 364 SMART WD40_4 50 87 IPR001680 GO:0005515
Arst9g03445 364 SMART WD40_4 247 295 IPR001680 GO:0005515
Arst9g03445 364 FunFam Mitotic checkpoint protein bub3, putative 131 359 - -
Arst9g03445 364 Pfam WD domain, G-beta repeat 254 295 IPR001680 GO:0005515
Arst9g03445 364 Pfam WD domain, G-beta repeat 20 47 IPR001680 GO:0005515
Arst9g03445 364 Pfam WD domain, G-beta repeat 137 152 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03445 Arst-Chr9 111346478 111349383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03445 139 340 U-box Gene Family AT2G33340 25.366 1.68e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03445 K02180 - mnt:21387210 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03445 9 111346478 111349383 Arst9g03445 9 111346478 111349383 ECH