Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03433 ATGATTCATTTCCAAGTCTTCACATGTCACATGCAGCTTCTCAATTCTCATGCAGACATGCTTGCTATTGAAAGAAGGAGAGAGAGGGGCAGAGGGAAAATAAGAGAAGCATCTCATTGCAAAAGGAAATTGAATCCTTTCTGTTATAGACTCCCATCCCTCTCCCTACCTCCCTCTCTTCAATCTTCTTTCTTAATCATGGCCACCTTCGGAGGAACCCAGCAAAAGTGCATGGCATGTGACAAGACGGTCTACCTTGTTGATAAGCTTACCGCCGATGGCCGTATCTTTCATAAGGCCTGCTTCCGTTGCCACCATTGCCGTAGCACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGGGTGCTGTACTGCAGACCACACTATGATCAACTCTTCAAGAGAACTGGTAGCTTAGACAAAAGCTTCGAAGGAATTCCCAAAGTCCAGAAAGAAAGACAGCCCTCTGAAATTGAGAGAAGTCCTAAACATATCTCAAACGTCTTCGTGGGCACCACAGACAAATGTGTTTGTTGCAAAAAGACAGTGTATCCCACTGAGAGGGTTACAATTAATGGGACTCCCTACCATAGGGGCTGCTTCAAATGTACATATGGAGGTTGCACTATAAGCTCATCAAACTTTGTTACACATGAGGGGAAGCTCTACTGCAAACACCATCACATTCAACTCTTCAAAGAGAAAGGGAATTACAGCCAGCTCGAGAATGACGTCAACACCATTGCTATTTAA 753 0.4449 MIHFQVFTCHMQLLNSHADMLAIERRRERGRGKIREASHCKRKLNPFCYRLPSLSLPPSLQSSFLIMATFGGTQQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGIPKVQKERQPSEIERSPKHISNVFVGTTDKCVCCKKTVYPTERVTINGTPYHRGCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDVNTIAI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03433 250 SMART lim_4 175 227 IPR001781 -
Arst9g03433 250 SMART lim_4 76 128 IPR001781 -
Arst9g03433 250 PANTHER OS06G0237300 PROTEIN 54 157 - -
Arst9g03433 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 143 - -
Arst9g03433 250 ProSiteProfiles LIM domain profile. 75 135 IPR001781 -
Arst9g03433 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 70 102 - -
Arst9g03433 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 201 - -
Arst9g03433 250 FunFam LIM domain and actin-binding 1 170 240 - -
Arst9g03433 250 CDD LIM1_SF3 73 135 - -
Arst9g03433 250 Gene3D Cysteine Rich Protein 170 240 - -
Arst9g03433 250 Gene3D Cysteine Rich Protein 72 141 - -
Arst9g03433 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 241 - -
Arst9g03433 250 ProSiteProfiles LIM domain profile. 174 234 IPR001781 -
Arst9g03433 250 ProSitePatterns LIM zinc-binding domain signature. 77 111 IPR001781 -
Arst9g03433 250 FunFam LIM domain and actin-binding 1 71 141 - -
Arst9g03433 250 Pfam LIM domain 77 131 IPR001781 -
Arst9g03433 250 Pfam LIM domain 176 231 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03433 Arst-Chr9 111293962 111296606 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Arst9g03433 LIM 1.9e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03433 K09377 - gmx:100306027 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03433 9 111293962 111296606 Arst9g03433 9 111293962 111296606 ECH