Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03432 ATGATTCATTTCCAAGTCTTCACATGTCACATGCAGCTTCTCAATTCTCATGCAGACATGCTTGCTATTGAGGAAGAAAGAAGGAGAGAGAGGGGCAGAGGGAAAATAAGAGAAGCATCTCATTGCAAAAGGAAATTGAATCCTTTCTGTTATAGACTCCCATCCCTCTCCCTACCTCCCTCTCTTCAATCTTCTTTCTTAATCATGGCCACCTTCGGAGGAACCCAGCAAAAGTGCATGGCATGTGACAAGACGGTCTACCTTGTTGATAAGCTTACCGCCGATGGCCGTATCTTTCATAAGGCCTGCTTCCGTTGCCACCATTGCCGTAGCACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGGGTGCTGTACTGCAGACCACACTATGATCAACTCTTCAAGAGAACTGGTAGCTTAGACAAAAGCTTCGAAGGAATTCCCAAAGTCCAGAAAGAAAGACAGCCCTCTGAAATTGAGAGAAGTCCTAAACATATCTCAAACGTCTTCGTGGGCACCACAGACAAATGTGTTTGTTGCAAAAAGACAGTGTATCCCACTGAGAGGGTTACAATTAATGGGACTCCCTACCATAGGGGCTGCTTCAAATGTACATATGGAGGTTGCACTATAAGCTCATCAAACTTTGTTACACATGAGGGGAAGCTCTACTGCAAACACCATCACATTCAACTCTTCAAAGAGAAAGGGAATTACAGCCAGCTCGAGAATGACGTCAACACCATTGCTATTTAA 759 0.4453 MIHFQVFTCHMQLLNSHADMLAIEEERRRERGRGKIREASHCKRKLNPFCYRLPSLSLPPSLQSSFLIMATFGGTQQKCMACDKTVYLVDKLTADGRIFHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGIPKVQKERQPSEIERSPKHISNVFVGTTDKCVCCKKTVYPTERVTINGTPYHRGCFKCTYGGCTISSSNFVTHEGKLYCKHHHIQLFKEKGNYSQLENDVNTIAI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03432 252 ProSiteProfiles LIM domain profile. 176 236 IPR001781 -
Arst9g03432 252 CDD LIM1_SF3 75 137 - -
Arst9g03432 252 FunFam LIM domain and actin-binding 1 172 242 - -
Arst9g03432 252 Pfam LIM domain 79 133 IPR001781 -
Arst9g03432 252 Pfam LIM domain 178 233 IPR001781 -
Arst9g03432 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 243 - -
Arst9g03432 252 ProSiteProfiles LIM domain profile. 77 137 IPR001781 -
Arst9g03432 252 PANTHER OS06G0237300 PROTEIN 48 159 - -
Arst9g03432 252 ProSitePatterns LIM zinc-binding domain signature. 79 113 IPR001781 -
Arst9g03432 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 72 104 - -
Arst9g03432 252 FunFam LIM domain and actin-binding 1 73 143 - -
Arst9g03432 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 203 - -
Arst9g03432 252 SMART lim_4 177 229 IPR001781 -
Arst9g03432 252 SMART lim_4 78 130 IPR001781 -
Arst9g03432 252 Gene3D Cysteine Rich Protein 172 242 - -
Arst9g03432 252 Gene3D Cysteine Rich Protein 74 143 - -
Arst9g03432 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03432 Arst-Chr9 111293962 111296610 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Arst9g03432 LIM 2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03432 K09377 - gmx:100306027 336.65