Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03402 ATGTCTACTGCTAGGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAGAAGATGAGCAATGAGAGCAACCTTCAAGTCACATTTTCCAAGCGCCGTGGTGGGTTGTTTAACAAAGCTAGTGAACTTTGCACTCTCTGTGGTGCTGAAGTGGCAATCATCGTGTTTTCCCCAGGACAGAAGGTCTTCTCCTTTGGCCACCCAAGCGTTCAAACAATCATAGATCGTTACCTCATGCATGCGTCCATGCATAACTCTGGCACCATGCAGTTCATCGAGGCCCAGCGAAGTGCTAGTGTGTGTGAGCTGAACGAACAGCTCACACGAATTAGCAACCAGCTGGATGTCGAAAAAAAACGTAGCGATGAACTAAGCCGCCTTCAGAAAACTGTCATGACACAGTTCTGGTGGGCTTTGTCCATTGAAAACATGGACAAGACCCAACTCAACCAACTGAAGGCGGCTTTAGAAAAACTCAAGAAGAGTGTCATGTACTATGCTGAAAAGCTCCATATTCAAGGCATTGTTGCTAACCCTCCTCAGCCACTCCTTGGTTTGCCATCTTCAAGTGATGTGGTGCATCACCAACCTCCTTTCCCACCACCAACAACTCATCATGTGTCTCAACTATTTGCTTCCCATATTCGTCAACCTCTGATGCTTAACGGCGAGAACCGTTTGATGCATAATCCCATGTTTGCTGATTGGAGCATGTTGCACCAACATGGTTTTAACATCAACACTGGTATGGGAGGGTTTGGAAATATGGGTGGATTGTTTTGA 780 0.4628 MSTARKSRGRQKIEMKKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVAIIVFSPGQKVFSFGHPSVQTIIDRYLMHASMHNSGTMQFIEAQRSASVCELNEQLTRISNQLDVEKKRSDELSRLQKTVMTQFWWALSIENMDKTQLNQLKAALEKLKKSVMYYAEKLHIQGIVANPPQPLLGLPSSSDVVHHQPPFPPPTTHHVSQLFASHIRQPLMLNGENRLMHNPMFADWSMLHQHGFNINTGMGGFGNMGGLF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03402 259 Gene3D - 88 172 - -
Arst9g03402 259 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Arst9g03402 259 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Arst9g03402 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Arst9g03402 259 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Arst9g03402 259 Coils Coil 148 168 - -
Arst9g03402 259 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Arst9g03402 259 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Arst9g03402 259 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Arst9g03402 259 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Arst9g03402 259 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Arst9g03402 259 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Arst9g03402 259 PANTHER MADS BOX PROTEIN 10 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03402 Arst-Chr9 111196529 111197308 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03402 4 189 Type I MADS-box Gene Family AT5G60440 51.323 2.51e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst9g03402 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03402 - - aip:107616132 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03402 9 111196529 111197308 Arst9g03402 9 111196529 111197308 ECH