Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03400 ATGTCGAGTTCAAGAAGCGGTGCAAGGAAAAGCAGGGGTCGCCAAAGAATTGAGATGAAGAAGATGAGCAACGAAAGCAACCTCCAAGTCACGTTCTCTAAGCGTCGGAGCGGCTTGTTCAAGAAAGCAAGTGAGCTTTGCACCCTCTGCGGTGCTGACGTGGCACTAGTCGTGTTTTCTCCTGGCCAGAAAGTCTTTTCCTTCGGCCACCCAAACGTGGAAACCGTTATAGATCGTTACCTGTCGCGTGCATCTACTCTCCCAAACTTATCCGGCACTTTGCAATTCATTGAGGCGCACCGCAACGCCAATGTGCGTGACTTCAACTCTAGACTCATGCAGGTGAATAACCAACTTGAAAGTGAGAAGCAACGTTCTGATCACTTGAATCATTTTCATAAGGTTGCCATGAATCAGTTCTGGTGGGCCTTGCCAATTGAAAATATGAGCAAGACCCAACTAAACCAGTTCAGGGCGGCACTTGAGAACCTTAAAAAGAGTGTCGCGCAACATGTCAATAGCCTCTTCGTTCACGAAAGTATTAACAACCCTACTCAATTCTTTGGTCAGTCATCTTCAAATGCTCTAGTGCCACATCAGCCTTCTCCTCCTCCTCTTCCACCACCACCAACTTCCGCTCAACTAGTTCCTCAGTTGTTTGGTAATGGTCCACACTTTCTACAGCATCAGAGCCCTATGATGCTTCATGAGAGCCCTATGATGCAAAATCATATGTTTAACATGAACAACATTGGACAATTTGGATCTTCTGCTGCTGGATTCCTTTGA 789 0.4651 MSSSRSGARKSRGRQRIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGQKVFSFGHPNVETVIDRYLSRASTLPNLSGTLQFIEAHRNANVRDFNSRLMQVNNQLESEKQRSDHLNHFHKVAMNQFWWALPIENMSKTQLNQFRAALENLKKSVAQHVNSLFVHESINNPTQFFGQSSSNALVPHQPSPPPLPPPPTSAQLVPQLFGNGPHFLQHQSPMMLHESPMMQNHMFNMNNIGQFGSSAAGFL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03400 262 Coils Coil 105 125 - -
Arst9g03400 262 SUPERFAMILY SRF-like 13 83 IPR036879 GO:0003677|GO:0046983
Arst9g03400 262 CDD MADS_MEF2_like 13 81 IPR033896 GO:0000977|GO:0045944
Arst9g03400 262 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Arst9g03400 262 Gene3D - 24 90 IPR036879 GO:0003677|GO:0046983
Arst9g03400 262 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Arst9g03400 262 MobiDBLite consensus disorder prediction 188 211 - -
Arst9g03400 262 PANTHER MADS BOX PROTEIN 14 171 - -
Arst9g03400 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Arst9g03400 262 FunFam Agamous-like MADS-box protein AGL62 24 89 - -
Arst9g03400 262 Coils Coil 154 174 - -
Arst9g03400 262 MobiDBLite consensus disorder prediction 1 25 - -
Arst9g03400 262 Gene3D - 92 196 - -
Arst9g03400 262 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Arst9g03400 262 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Arst9g03400 262 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03400 Arst-Chr9 111140501 111141307 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03400 8 195 Type I MADS-box Gene Family AT5G60440 53.968 3.11e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst9g03400 SRF-TF 8.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03400 - - aip:107616132 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03400 9 111140501 111141307 Arst9g03400 9 111140501 111141307 ECH