Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03397 ATGGAGATGTTGAAGCAGAAAAAGAAAACAACAGGGAGGAAGAGGATTGAGATCAAGAAGCTTGAGAAAGAAGCAAACAAGCAAGTCACCTTCTCAAAGCGGCGAGCCGGGATGTTTAAGAAAGCCAGTGAGCTATGCATATTATGCAATGCTCACGTTGCCATTATAGTGTTCTCGCCGGCCGACAAGTTGTTCTGCTTTGGAGAACCCAGCACGGAGGCCGTGGTGGAGCGGTACCTGAAAGGATCGCCAGATTTTGAGCCAATAAAGTCCTCCGAAAGGAAGAAGCCGGTGTCGTGCGAAGAGCATAACAGAAAATACGAAGAGGCGATGAAGGCGTTGGAGTTGGAAAAGAAGAACAAGGCTGATGTTGAAGGTTTTGCTAAGGTTTGGGGGAGAGGGGAATGGTGGAATGAAGAGATTCATGAGATGAGTGTTGAGCAGTTGGAGCAGTTTTTGGTAGCCATTTATGAATTGAGGAGTAGGCTTCTTCAAAGGGCTGCTGAAATCATGATGATGCATGGAATGTTATAG 534 0.4644 MEMLKQKKKTTGRKRIEIKKLEKEANKQVTFSKRRAGMFKKASELCILCNAHVAIIVFSPADKLFCFGEPSTEAVVERYLKGSPDFEPIKSSERKKPVSCEEHNRKYEEAMKALELEKKNKADVEGFAKVWGRGEWWNEEIHEMSVEQLEQFLVAIYELRSRLLQRAAEIMMMHGML 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03397 177 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Arst9g03397 177 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Arst9g03397 177 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Arst9g03397 177 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Arst9g03397 177 Gene3D - 24 93 IPR036879 GO:0003677|GO:0046983
Arst9g03397 177 FunFam Agamous-like MADS-box protein AGL62 23 87 - -
Arst9g03397 177 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Arst9g03397 177 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Arst9g03397 177 PANTHER MADS BOX PROTEIN 13 164 - -
Arst9g03397 177 Coils Coil 100 124 - -
Arst9g03397 177 Coils Coil 4 24 - -
Arst9g03397 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Arst9g03397 177 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03397 Arst-Chr9 111127342 111127875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03397 8 152 Type I MADS-box Gene Family AT5G60440 40.000 1.41e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Arst9g03397 SRF-TF 5.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03397 - - gmx:100814979 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03397 9 111127342 111127875 Arst9g03397 9 111127342 111127875 ECH
Arst5g01712 5 20212736 20213737 Arst9g03397 9 111127342 111127875 PCT