Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst9g03359 | ATGGCAACAGCACAACAAGAATCAGGATCAGGATCAGAATCAGCCGTTGCAGTTAACGGCGTTGAAGACTCCTACTTCTCAGCTCTCTTTGATGATGAAGGTAACCTCGTCCCCATCTCCGATGACAAGTACGCTCATGAATTGCAGTTACAAGAGACTATCATGTCCTCCTTCATCGCTTCTCAAAGCACCATCGAAGGCTCATCGTCATCAAAAACCGTTCGTTGCCTTCCATCTTCATCAACACCGTCGTCATCACGACCAGTCTTTGTTGTCCCCAAAACCGAGTACATAGAGCTTCTGGATGACGACGAAATGCTTATCGTATGTGAGATTTGTGCAGAAACCAAAGGGACTGATCAGATGTTCAGGAACAAGAAATGTGATCACTCCTTTTGCTCTGACTGTGTCACCAAGCATGTGGCCACAAAGATCCAAGAGAGCTTAACGATTGTTCCTTGCCCCGGATTGAACTGCAAGGGCGTGATGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGGTTCTTGATAGGTGGGACGATGCACTCTGTGAGGCCCTGTTTCTTGCGGTTCCGAAATTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTGACGAGAATGAGGGCGGTGAAGGGATTATCAGGGAAGCTGAGTGCCCCTTTTGCCACAGGCTCTTCTGTGCCAGGTGTTGTGTTCCATGGCACCCTGGGGTTGAGTGTAACGTGTTGCAGTCACTGAATGAGGATGAGAGAGGGAGGGAGGATCTTCTTCTTAGGGACCTTGCTGCTCAAAAGAAATGGAATAGGTGTCCCAGATGCAAGTTCTATGTGGAGAAGACTGAAGGGTGCTTGCATATTACATGCAGGTGCCGATTCGAGTTTTGCTATGCTTGTGGTGAACCTTGGAGTAGCACTCATGGTGGATGCCAAAGGATTAGATGA | 951 | 0.4858 | MATAQQESGSGSESAVAVNGVEDSYFSALFDDEGNLVPISDDKYAHELQLQETIMSSFIASQSTIEGSSSSKTVRCLPSSSTPSSSRPVFVVPKTEYIELLDDDEMLIVCEICAETKGTDQMFRNKKCDHSFCSDCVTKHVATKIQESLTIVPCPGLNCKGVMELDSCRPMLPKEVLDRWDDALCEALFLAVPKFYCPFRDCSAMLLDENEGGEGIIREAECPFCHRLFCARCCVPWHPGVECNVLQSLNEDERGREDLLLRDLAAQKKWNRCPRCKFYVEKTEGCLHITCRCRFEFCYACGEPWSSTHGGCQRIR | 316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst9g03359 | 316 | CDD | BRcat_RBR_unk | 193 | 244 | - | - | |
| Arst9g03359 | 316 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 188 | IPR013083 | - | |
| Arst9g03359 | 316 | SUPERFAMILY | RING/U-box | 182 | 247 | - | - | |
| Arst9g03359 | 316 | ProSitePatterns | Zinc finger RING-type signature. | 128 | 137 | IPR017907 | - | |
| Arst9g03359 | 316 | CDD | Rcat_RBR_unk | 269 | 305 | - | - | |
| Arst9g03359 | 316 | Gene3D | - | 241 | 316 | - | - | |
| Arst9g03359 | 316 | Pfam | Zinc finger, C3HC4 type (RING finger) | 110 | 155 | IPR018957 | GO:0046872 | |
| Arst9g03359 | 316 | SMART | ibrneu5 | 178 | 243 | IPR002867 | GO:0008270 | |
| Arst9g03359 | 316 | SMART | ibrneu5 | 253 | 312 | IPR002867 | GO:0008270 | |
| Arst9g03359 | 316 | FunFam | RBR-type E3 ubiquitin transferase | 244 | 316 | - | - | |
| Arst9g03359 | 316 | Pfam | IBR domain, a half RING-finger domain | 195 | 243 | IPR002867 | GO:0008270 | |
| Arst9g03359 | 316 | Pfam | IBR domain, a half RING-finger domain | 262 | 312 | IPR002867 | GO:0008270 | |
| Arst9g03359 | 316 | ProSiteProfiles | TRIAD supradomain profile. | 106 | 316 | IPR044066 | - | |
| Arst9g03359 | 316 | SUPERFAMILY | RING/U-box | 254 | 312 | - | - | |
| Arst9g03359 | 316 | FunFam | RBR-type E3 ubiquitin transferase | 105 | 191 | - | - | |
| Arst9g03359 | 316 | ProSiteProfiles | Zinc finger RING-type profile. | 110 | 155 | IPR001841 | - | |
| Arst9g03359 | 316 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 63 | 310 | IPR031127 | GO:0004842|GO:0016567 | |
| Arst9g03359 | 316 | SUPERFAMILY | RING/U-box | 107 | 187 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst9g03359 | Arst-Chr9 | 110843539 | 110845143 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst9g03359 | 110 | 304 | C3H Transcription Factor Family | AT2G19610 | 25.743 | 4.65e-15 | 73.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst9g03359 | K11975 | - | qsa:O6P43_027978 | 385.571 |