Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03332 ATGGTTATGGCTCCATTCAAGGAGGAGCAGCCTCAGCCACCGCCCATCGACCACGCCACCACCCTCATCTGTGCTCTTAACTTCCTCTCCCGTGATCTCCCTCTCCCTCCCCACCTCCTCAGTTCTGTTTCTACCATCTATCACTCTCACCCTTCTTCGCAGAACCAGCTCCAAGATGATATAGGGAATTCTAGTGAAAATTTAATTACGGACCTTGAAGGTGCATTGTTTAGGCAACGCTCTTCGGGTTCAGAATTGGAGAGAGCAAGGGAAAGCCGTTATCAAAATCGGATACAGCATCGATTAAATGAACTTGAAGGATTGCCTTCAACAAGGGGAGAGGATTTGCAAACAAAGTGCCTGCTTGAACTTTATGGTCTAAAGCTACGAGAGTTGCATTCAAAGGTTCGGTCTGATGTGAGTTCTGAGTACTGGCTGAATGTTAAATGTGCATACCCCGATAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCAGCGTCCGCCATATGGTGTTGGAGATCCCTTTGCCATGGATGCTGATGATCAAATAAGGAAAAAAAGGGATGCTGAGAGACTATCGAGATTAGAAGAGGAGGAAAAAACTCATATAGAAACTAGAAAAAGAAAATTTTTTGCAGAAATACTCAATACCGTCCGTGAGTTTCAATTGCAAATTCAAGCTGCTGTGAAGCGGAGAAAACAGAGGAATGATGGTATTCAGGCATGGCATGGAAGGCAAAGGCAACGTGCCACACGGGCTGAGAAATTAAGGTTCCAAGCATTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAGGAGAGTAAGAATGAAAGATTAACCACGCTTCTTGAAGAAACCAATAAACTACTAGTAAATTTAGGAGCTGCTGTTCAACGTCAAAAGGACTCCAAACATTCAGATGGTATAGAACCCTTGGAAGATTCTGAAGTTGATTTACCTGAGTCAGACGCTTCTAAGAATGAAAAGGAATCACCTCTTGATGAAGAGATGGATATGATAGATTCTGATCATAATGGTGACACTAGTGATTTACTCGAGGGTCAGCGGCAATACAATTCTGCCATACATTCGATTCAAGAAAAGGTTACTGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATATCAAATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAACGGAATTTTGGCTGATGAAATGGGTCTTGGGAAGACAATACAAACAATTTCGTTAATAGCACATCTTATGGAGCACAAGGGTGTTACTGGTCCCCATTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGATGAATGAATTCTCAACATGGGTTCCAAGCATAACAACTATTCTTTATGATGGACGGTTGGATGAGAGGAAAGCAATGAAGGATGATTTGTTAGGGGAGAGGAAATTTAATGTTCTGCTAACACACTATGATCTTATAATGAGAGATAAAGCAATTCTCAAGAAAATTCACTGGATCTACCTGATTGTGGATGAAGGACATCGGTTGAAGAATCATGAATCTGCTCTAGCAAGGACACTGGAAGCCGGCTATCACATTCAACGCAGACTCCTGTTAACTGGCACCCCAATTCAAAACAGCTTGCAGGAGTTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCTGTTCAGAATTTCGAGGACTGGTTTAATGCCCCTTTTGCTGATCGAGTTGATGTCTCTTTAACAGATGAAGAACAACTTTTGATTATTCGACGTCTACATCAAGTAATAAGGCCCTTCATATTAAGAAGAAAAAAGGATGAGGTGGAAAAATTTCTTCCCTCGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGACGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAGAGCTTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGCAACCATCCATACCTCTTTGTGGGAGATTATGATATGTATAACCGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCAGGCCACAGAGTCCTCCTTTTTTCACAAATGACTAGACTCATGGATATTCTCGAGATTTATTTGAGACTTCATGATTTTAAGTATCTAAGACTTGATGGCTCGACAAAAACGGAGGAAAGAGGCACTTTATTACGAAAATTCAATGCTCCTGACTCCCCATACTTCATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACGGCAGATACTGTTATAATATTTGACAGTGATTGGAACCCCCAAATGGATCAACAAGCAGAGGATCGAGCACATCGCATTGGTCAAAAGAAAGAAGTTAGAGTTTTCGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCAAAAGTCATCCAGGCAGGACTTTTCAACACAACTTCGACAGCTCAGGACAGAAGAGAAATGCTAGAGGAGATTATGCGTAGAGGTACAAGTTCACTTGGGACAGATGTACCTAGTGAGAGAGAAATTAACCGCCTCGCAGCCCGATCAGATGAGGAATTTTGGCTATTTGAAAAAATGGATGAAGAGAGAAGACTAAAGGAAAATTACAGATCTCGTTTAATGGACGAGCATGAATTGCCAGATTGGGTGTACTCTCCCCTTCATAACAAGGATGAAAAGCTCAAAGATTTCAACAATGGCAGTGCTACTGGAAAGCGTAAAAGAAAAGAAGTTGTTTATGCAGATACATTAAGTGATCTTCAATGGATGAAGGCCGTGGAGAACGGAGAAGATCTATCAAGGCTTTCAGTAAGGGGGAAGAGAAGAGACCACCTCTCATCTGACAACGCAGCACAAGCCAGCGACAATTCAGGGGCCGAAGAAAGGTTCTTGGAACTCCGCGCTGAGAGTGTCCACATGGCAAATGACAGAACAAGTGAAGATAGTTTCCATGTGACCCCTGCCTCAAAGAAACCCAAGCTTGAAGGCGCAAATTCCCATAGGCATGCATACGAGGATGTCAAAGGAAGTGGCTTGAACCAGCATGTGTTATCATGGAACACTCACAGAAAGAAGAGATCAAGTTATGGTCAGAGTTCATCATCTGATACCAAAGGACAGAGTTCAAATGGAAGAGCTAGCTGGTAA 3267 0.4221 MVMAPFKEEQPQPPPIDHATTLICALNFLSRDLPLPPHLLSSVSTIYHSHPSSQNQLQDDIGNSSENLITDLEGALFRQRSSGSELERARESRYQNRIQHRLNELEGLPSTRGEDLQTKCLLELYGLKLRELHSKVRSDVSSEYWLNVKCAYPDRQLFDWGMMRLQRPPYGVGDPFAMDADDQIRKKRDAERLSRLEEEEKTHIETRKRKFFAEILNTVREFQLQIQAAVKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKHSDGIEPLEDSEVDLPESDASKNEKESPLDEEMDMIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWMNEFSTWVPSITTILYDGRLDERKAMKDDLLGERKFNVLLTHYDLIMRDKAILKKIHWIYLIVDEGHRLKNHESALARTLEAGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRLKENYRSRLMDEHELPDWVYSPLHNKDEKLKDFNNGSATGKRKRKEVVYADTLSDLQWMKAVENGEDLSRLSVRGKRRDHLSSDNAAQASDNSGAEERFLELRAESVHMANDRTSEDSFHVTPASKKPKLEGANSHRHAYEDVKGSGLNQHVLSWNTHRKKRSSYGQSSSSDTKGQSSNGRASW 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03332 1088 PANTHER SNF2/RAD54 HELICASE FAMILY 178 999 - -
Arst9g03332 1088 MobiDBLite consensus disorder prediction 1053 1088 - -
Arst9g03332 1088 MobiDBLite consensus disorder prediction 322 350 - -
Arst9g03332 1088 FunFam Probable ATP-dependent DNA helicase CHR12 615 914 - -
Arst9g03332 1088 SMART ultradead3 380 573 IPR014001 -
Arst9g03332 1088 MobiDBLite consensus disorder prediction 1014 1048 - -
Arst9g03332 1088 CDD SF2_C_SNF 686 819 - -
Arst9g03332 1088 Gene3D - 615 912 IPR027417 -
Arst9g03332 1088 Pfam Snf2-ATP coupling, chromatin remodelling complex 903 963 IPR029295 GO:0042393
Arst9g03332 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 862 IPR027417 -
Arst9g03332 1088 Gene3D - 352 608 IPR038718 -
Arst9g03332 1088 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 396 562 IPR014001 -
Arst9g03332 1088 MobiDBLite consensus disorder prediction 1014 1088 - -
Arst9g03332 1088 MobiDBLite consensus disorder prediction 977 999 - -
Arst9g03332 1088 MobiDBLite consensus disorder prediction 303 350 - -
Arst9g03332 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 609 IPR027417 -
Arst9g03332 1088 Pfam SNF2-related domain 387 675 IPR000330 GO:0005524|GO:0140658
Arst9g03332 1088 SMART SnAC_2 901 963 IPR029295 GO:0042393
Arst9g03332 1088 SMART helicmild6 724 808 IPR001650 -
Arst9g03332 1088 FunFam Chromatin structure-remodeling complex protein SYD 375 618 - -
Arst9g03332 1088 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 698 865 IPR001650 -
Arst9g03332 1088 Pfam Helicase conserved C-terminal domain 695 808 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03332 Arst-Chr9 110612098 110619557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03332 691 836 RAD5 or RAD16-like Gene Family AT5G43530 37.333 2.95e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Arst9g03332 SNF2_N 4.3e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03332 - - gmx:100786280 1820.82