Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03245 ATGAATCCTGATGATCATGGTGTTGGTAGAGTAATGAAGGAGGAGTATCTAGGAGAAGGGTCTTGTTCCTTTTCATATCCAATGGTGGTGGATGTTCCTCCTCCTCCGCCGCCTGCGCCGCCGCCGCATCCAATGGAGGGGCTTAATGAGAGTGGTCCTCCGCCGTTCCTGACAAAGACATATGACATCGTTGAAGACCCTTCAACAAATCACATAGTTTCTTGGAGCAAAGGAAACAACAGCTTCGTTGTGTGGGATCCTCAAGCTTTCTCCATTACCCTTCTCCCAAGATTCTTCAAGCACAACAATTTCTCCAGCTTTGTCCGCCAACTCAACACCTATGGTTTTAAAAAGGTAGATCCAGATAGGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGCAAAGGGTGCTTTTGAAGAACATCAAAAGGAGGAAGACAAATCAAACTCATCATCATCACCAGCAAGGTTTAGACCCTTGTGTTGAAGTTGGAAGGTTTGGTGGATTAGATGGAGAACTCAACCGGTTGCGGCGTGACCGGCAGGTACTAATGGCGGAGCTGGTGAAGCTCAGACAACAGCAGCAGACTACAAAGTCCCAAATTCAAGCCATGGAAGTTAAGCTTCGAAAGACGGAGCAGAAACAGCAGCAGATGATGACCTTCATGGCAAGGGCAATGCAGAATCCAAACTTTGTGCAGCAATTGGTTCAACAAAAGGATTGGAGAAAGGAATTGGAGGAAGCTTTCTCTAATAAGAGGATGAGACCTATTCATCAAGGACCTAGTAACAATAATGTTGAAGTAGCAGTAGGTTATCATGATGGATTATTAGGTTTTGTTGATGAAGATTGCTCAACTTTTATTAAACTAGAATCACACATTGATGATGATGATGATAATGATAACAAGTTTGATTTTGAGGTATCAGAGATGGACCTTCTTGGTTTGAATGTTAAGGGACAAAGTAGCAGTGAATATCATCATAATCATGCTCAAGTTGGAGTAAGTAGAAATAATAATAATAATAATAATATTGATGAAGTGTTTTGGGAAGATTTGTTGAATGAAGGTTTTGAAGATGAACATGTTCTTGCAGCTGCTGAAGATGTAGATGTCTTGGCTGAACAACTTGGTTATTTAGCTTCTAGTCCTCATAAATAA 1164 0.4149 MNPDDHGVGRVMKEEYLGEGSCSFSYPMVVDVPPPPPPAPPPHPMEGLNESGPPPFLTKTYDIVEDPSTNHIVSWSKGNNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQRVLLKNIKRRKTNQTHHHHQQGLDPCVEVGRFGGLDGELNRLRRDRQVLMAELVKLRQQQQTTKSQIQAMEVKLRKTEQKQQQMMTFMARAMQNPNFVQQLVQQKDWRKELEEAFSNKRMRPIHQGPSNNNVEVAVGYHDGLLGFVDEDCSTFIKLESHIDDDDDNDNKFDFEVSEMDLLGLNVKGQSSSEYHHNHAQVGVSRNNNNNNNIDEVFWEDLLNEGFEDEHVLAAAEDVDVLAEQLGYLASSPHK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03245 387 SMART hsfneu3 52 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst9g03245 387 FunFam Heat shock transcription factor 1 49 146 - -
Arst9g03245 387 Coils Coil 174 215 - -
Arst9g03245 387 ProSitePatterns HSF-type DNA-binding domain signature. 95 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst9g03245 387 PRINTS Heat shock factor (HSF) domain signature 107 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst9g03245 387 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst9g03245 387 PRINTS Heat shock factor (HSF) domain signature 56 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst9g03245 387 Pfam HSF-type DNA-binding 56 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Arst9g03245 387 SUPERFAMILY "Winged helix" DNA-binding domain 51 145 IPR036390 -
Arst9g03245 387 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 42 264 IPR027725 -
Arst9g03245 387 Gene3D - 49 147 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03245 Arst-Chr9 109939058 109940792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03245 36 386 HSF AT3G22830 55.438 1.62e-128 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Arst9g03245 HSF_DNA-bind 5.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03245 K09419 - gmx:100809515 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst3g01109 3 8524177 8527347 Arst9g03245 9 109939058 109940792 PCT