Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03222 ATGGGGACCCCCAACGGGGATGTGAGGAAGAAGGAGGAGGAGGAGGAGGCTAAGTTGATGGAACAGGAATACCAAGACAAGAAAGAGGAGGAGGAGGAAGAGGAGGAGGATCCCAATGCAGTTTGGAGGTTTAGGATATCGGAGCCGTTGAAGGAGACGCTGAAGGGGAAGGGAATAGAGTCACTGTTTCCGATTCAGGCCATCACCTTTGATACCATTCTTGATGGCTCCGATTTGGTTGGCCGTGCTCGAACCGGTCAGGGAAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTGATAAACGGTATAGCCAAAGCTTCAAGAAAGACTGGTTATAGAAGGCCTCCAAGCGTTCTGGTTCTTTTACCAACAAGGGAATTGGCATCTCAGGTTCACTCTGACTTTGAACTTTATGGTGGCGCCGTCGGATTAACATCTTGCTGTTTATATGGTGGAGCTCCATATCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCAGGCCGGATTAAGGATCATATAGAGAGGGAAAATATTGATCTAAGCCAGCTTAGATTTCGCGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTTGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTTGGAAATACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCCTGCACTACTTCTGCCAGGTCCCGCCTTATTCCGGACATCATTCGCTGTTATAGCAGCGGAGGACGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCAAGAGCTCTCCATGGAGACATACAGCAGGCGCAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGCAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCGCCAAGGGATGTAGAAGCCTATATCCATCGTTCAGGGCGCACGGGACGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAGTATATCCAAAATCGAAAGAGAATCCGGTGTCAAATTTGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCTATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCGGCGTTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCCGGTTTGTCAGTTGTTGACTTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATGAAGAAAAGATCGCTTCTCACTTCCATGGAGAACCATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTGCAACTTTTGCATATGGAGTGTTGAGGAGATTCTTGGCCGAAGAGAAGGTTGAGGCAGTGAAGGGTCTCACTCTCACCGCCGAAGGAAGTGGCGTTGTCTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCAGGTGCAGTTCTATTTCAAAGGAAATTATTTTCCTCTCTGCATTCTTTCAACACATTTCTTTCATACTTTTTTCCAACAGGTAAGGACAAGGCCTCAAGTGTGAGGTTAGAGGTGTTGACAGCGTTGCCACGTTTGCAAGAAAAAGACCAATCAAGGGGTGGAAGATTTGGTAGTGGTGGCCCTCGTCGTGGTGGTTTCGGAGATAGAAGTGTGGGGAGCAGGTTTTTGGGTGGAAGAGGTGGCAGCGGCAGGAATGTTAGATTTTCCAGTGACAGATTCTCTAATAATGGTGGCATTGGGAGAGGTCGTGGCATCAGGAGTGGAAAGAGATGGTGA 1980 0.4545 MGTPNGDVRKKEEEEEAKLMEQEYQDKKEEEEEEEEDPNAVWRFRISEPLKETLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGIAKASRKTGYRRPPSVLVLLPTRELASQVHSDFELYGGAVGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVDLLAKALAKAVGYTEMKKRSLLTSMENHVTLLLEIGKPIFTATFAYGVLRRFLAEEKVEAVKGLTLTAEGSGVVFDVPAEDLDTYLAGAVLFQRKLFSSLHSFNTFLSYFFPTGKDKASSVRLEVLTALPRLQEKDQSRGGRFGSGGPRRGGFGDRSVGSRFLGGRGGSGRNVRFSSDRFSNNGGIGRGRGIRSGKRW 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03222 659 Pfam GUCT (NUC152) domain 473 594 IPR012562 GO:0003723|GO:0004386|GO:0005524
Arst9g03222 659 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 252 IPR014001 -
Arst9g03222 659 CDD DEADc 50 247 - -
Arst9g03222 659 SMART ultradead3 58 270 IPR014001 -
Arst9g03222 659 MobiDBLite consensus disorder prediction 597 641 - -
Arst9g03222 659 Gene3D - 5 253 IPR027417 -
Arst9g03222 659 MobiDBLite consensus disorder prediction 1 39 - -
Arst9g03222 659 Gene3D - 266 491 IPR027417 -
Arst9g03222 659 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 13 438 - -
Arst9g03222 659 Coils Coil 10 37 - -
Arst9g03222 659 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 196 204 IPR000629 -
Arst9g03222 659 SMART helicmild6 307 384 IPR001650 -
Arst9g03222 659 CDD SF2_C_DEAD 267 393 - -
Arst9g03222 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 396 IPR027417 -
Arst9g03222 659 SUPERFAMILY RNA-binding domain, RBD 477 548 IPR035979 GO:0003676
Arst9g03222 659 Gene3D - 492 555 - -
Arst9g03222 659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 423 IPR001650 -
Arst9g03222 659 Pfam DEAD/DEAH box helicase 63 240 IPR011545 GO:0003676|GO:0005524
Arst9g03222 659 Pfam Helicase conserved C-terminal domain 287 384 IPR001650 -
Arst9g03222 659 MobiDBLite consensus disorder prediction 1 25 - -
Arst9g03222 659 CDD GUCT_RH7_like 480 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03222 Arst-Chr9 109746399 109749721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03222 76 390 Eukaryotic Initiation Factors Gene Family AT1G72730 31.661 1.04e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03222 K16911 - gmx:100820207 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03222 9 109746399 109749721 Arst9g03222 9 109746399 109749721 ECH