Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03188 ATGTTTTTGTGGCTCAAAATTAACAGGAATAAGTTTCCAACGACAATTGAAGAATCTCCAGAAAGCAAGCTAGAGAGGATCTCGATCGAGATGGTGAGGGGAAAGACTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGTGACGTTTTCAAAGCGCAGAAATGGTCTTTTAAAGAAAGCTCATGAGTTATCTGTTCTCTGTGATGCTCAAGTTGGAGTCATAATATTCTCCCAAAAGGGAACCTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATATTGGAACGCTACCAGGAATATACCGGAGTGTTTCCACCCAACAAGTTAAGAGAGGATTATATCCAGAAACTCAAGTTTGACTCCGCAAGCATGGAAGAAAAAATTGAGATCCTTGAACTGTCTAGAAGGAAGATGCTGGGACACTGCTTGAGTTCTTGTTCTTTTGATGAACTCCAACAAATGGAGGACAAGCTCCATACAAGTTTGCAATGTATCCGTCTGAGAAAGACTCAACTATTTAAGGAGCAAATTGAGCAACTACAGAGCAAGGAGAGAAACTTGCTCAAAGAAAATGTCCGGTTAAGTGCAATGTGCATGGAAAAACCATTGAAGCACATAGAAGAGGAAGCAACAGAAACAACTCATCACACTTTGGATGTGGAGACTGATCTATTTATTGGGCTTCCAAAGCAGTATGCTGATCATAATCAAATATATACATAG 735 0.3918 MFLWLKINRNKFPTTIEESPESKLERISIEMVRGKTEMKRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSSTSSHISKILERYQEYTGVFPPNKLREDYIQKLKFDSASMEEKIEILELSRRKMLGHCLSSCSFDELQQMEDKLHTSLQCIRLRKTQLFKEQIEQLQSKERNLLKENVRLSAMCMEKPLKHIEEEATETTHHTLDVETDLFIGLPKQYADHNQIYT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03188 244 Gene3D - 43 107 IPR036879 GO:0003677|GO:0046983
Arst9g03188 244 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Arst9g03188 244 CDD MADS_MEF2_like 33 106 IPR033896 GO:0000977|GO:0045944
Arst9g03188 244 ProSiteProfiles K-box domain profile. 118 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst9g03188 244 Coils Coil 174 201 - -
Arst9g03188 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 194 - -
Arst9g03188 244 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Arst9g03188 244 FunFam MADS-box transcription factor MADS-MC 43 115 - -
Arst9g03188 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Arst9g03188 244 Coils Coil 24 44 - -
Arst9g03188 244 Pfam K-box region 119 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst9g03188 244 SUPERFAMILY SRF-like 33 108 IPR036879 GO:0003677|GO:0046983
Arst9g03188 244 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Arst9g03188 244 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Arst9g03188 244 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Arst9g03188 244 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03188 Arst-Chr9 109386075 109390648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03188 31 233 MADS-box Gene Family AT4G22950 48.325 1.32e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst9g03188 K-box 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03188 - - adu:107467111 482.256