Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03187 ATGTTTTTGTGGCTCAAAATTAACAGGAATAAGTTTCCAACGACAATTGAAGAATCTCCAGAAAGCAAGCTAGAGAGGATCTCGATCGAGATGGTGAGGGGAAAGACTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGTGACGTTTTCAAAGCGCAGAAATGGTCTTTTAAAGAAAGCTCATGAGTTATCTGTTCTCTGTGATGCTCAAGTTGGAGTCATAATATTCTCCCAAAAGGGAACCTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATATTGGAACGCTACCAGGAATATACCGGAGTGTTTCCACCCAACAAGTTAAGAGAGGATTATATCCAGAAACTCAAGTTTGACTCCGCAAGCATGGAAGAAAAAATTGAGATCCTTGAACTGTCTAGAAGGAAGATGCTGGGACACTGCTTGAGTTCTTGTTCTTTTGATGAACTCCAACAAATGGAGGACAAGCTCCATACAAGTTTGCAATGTATCCGTCTGAGAAAGACTCAACTATTTAAGGAGCAAATTGAGCAACTACAGAGCAAGTGCATGGAAAAACCATTGAAGCACATAGAAGAGGAAGCAACAGAAACAACTCATCACACTTTGGATGTGGAGACTGATCTATTTATTGGGCTTCCAAAGCAGTATGCTGATCATAATCAAATATATACATAG 693 0.3911 MFLWLKINRNKFPTTIEESPESKLERISIEMVRGKTEMKRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSSTSSHISKILERYQEYTGVFPPNKLREDYIQKLKFDSASMEEKIEILELSRRKMLGHCLSSCSFDELQQMEDKLHTSLQCIRLRKTQLFKEQIEQLQSKCMEKPLKHIEEEATETTHHTLDVETDLFIGLPKQYADHNQIYT 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03187 230 FunFam MADS-box transcription factor MADS-MC 43 115 - -
Arst9g03187 230 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Arst9g03187 230 CDD MADS_MEF2_like 33 106 IPR033896 GO:0000977|GO:0045944
Arst9g03187 230 Pfam K-box region 119 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst9g03187 230 Gene3D - 43 107 IPR036879 GO:0003677|GO:0046983
Arst9g03187 230 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Arst9g03187 230 Coils Coil 24 44 - -
Arst9g03187 230 SUPERFAMILY SRF-like 33 108 IPR036879 GO:0003677|GO:0046983
Arst9g03187 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 192 - -
Arst9g03187 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Arst9g03187 230 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Arst9g03187 230 ProSiteProfiles K-box domain profile. 118 213 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst9g03187 230 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Arst9g03187 230 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Arst9g03187 230 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03187 Arst-Chr9 109386069 109390648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03187 31 187 MADS-box Gene Family AT2G45660 58.228 1.51e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst9g03187 K-box 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03187 - - adu:107467111 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g03187 9 109386069 109390648 Arst9g03187 9 109386069 109390648 ECH