Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03186 ATGTTTTTGTGGCTCAAAATTAACAGGAATAAGTTTCCAACGACAATTGAAGAATCTCCAGAAAGCAAGCTAGAGAGGATCTCGATCGAGATGGTGAGGGGAAAGACTGAGATGAAGAGAATAGAGAATGAATGTAACCGAAAAGTGACGTTTTCAAAGCGCAGAAATGGTCTTTTAAAGAAAGCTCATGAGTTATCTGTTCTCTGTGATGCTCAAGTTGGAGTCATAATATTCTCCCAAAAGGGAACCTTATTTGAGTTCTCATCAACTTCTTCTCACATTTCAAAGATATTGGAACGCTACCAGGAATATACCGGAGTGTTTCCACCCAACAAGTTAAGAGAGGATTATATCCAGAAACTCAAGTTTGACTCCGCAAGCATGGAAGAAAAAATTGAGATCCTTGAACTGTCTAGAAGGAAGATGCTGGGACACTGCTTGAGTTCTTGTTCTTTTGATGAACTCCAACAAATGGAGGACAAGCTCCATACAAGTTTGCAATGTATCCGTCTGAGAAAGACTCAACTATTTAAGGAGCAAATTGAGCAACTACAGAGCAAGATTAATGCCTGGCATATTTTTCAGGAGAGAAACTTGCTCAAAGAAAATGTCCGGTTAAGTGCAATGTGCATGGAAAAACCATTGAAGCACATAGAAGAGGAAGCAACAGAAACAACTCATCACACTTTGGATGTGGAGACTGATCTATTTATTGGGCTTCCAAAGCAGTATGCTGATCATAATCAAATATATACATAG 759 0.39 MFLWLKINRNKFPTTIEESPESKLERISIEMVRGKTEMKRIENECNRKVTFSKRRNGLLKKAHELSVLCDAQVGVIIFSQKGTLFEFSSTSSHISKILERYQEYTGVFPPNKLREDYIQKLKFDSASMEEKIEILELSRRKMLGHCLSSCSFDELQQMEDKLHTSLQCIRLRKTQLFKEQIEQLQSKINAWHIFQERNLLKENVRLSAMCMEKPLKHIEEEATETTHHTLDVETDLFIGLPKQYADHNQIYT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03186 252 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Arst9g03186 252 CDD MADS_MEF2_like 33 106 IPR033896 GO:0000977|GO:0045944
Arst9g03186 252 ProSiteProfiles K-box domain profile. 118 216 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst9g03186 252 Gene3D - 43 107 IPR036879 GO:0003677|GO:0046983
Arst9g03186 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 202 - -
Arst9g03186 252 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Arst9g03186 252 Coils Coil 24 44 - -
Arst9g03186 252 FunFam MADS-box transcription factor MADS-MC 43 115 - -
Arst9g03186 252 SUPERFAMILY SRF-like 33 108 IPR036879 GO:0003677|GO:0046983
Arst9g03186 252 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Arst9g03186 252 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Arst9g03186 252 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Arst9g03186 252 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Arst9g03186 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Arst9g03186 252 Pfam K-box region 119 210 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03186 Arst-Chr9 109386069 109390648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03186 31 188 MADS-box Gene Family AT2G45660 57.862 9.09e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst9g03186 K-box 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03186 - - adu:107467111 474.937