Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03177 ATGTTTCCCATCAATCATATTGTCAATAACCAGCTTGCGAGTAGCTCCTCGGATAACACTGTCTTGTCATCGCCGTTGTCGGAGGGGGAGGTAGTGCTGGCGGCTAGCCACCCCAAGAAGAGAGCGGGGAGGAAAAAGTTCAGGGAGACGCGCCACCCTGTCTACCGCGGCGTGCGGCGGAGGAACTCCGGCAAGTGGGTTTGCGAGGTGAGGGAGCCAAACAAGAAGACGAGGATATGGCTCGGGACGTTCGCCACTGCGGAGATGGCAGCGCGTGCGCACGACGTGGCCGCTATCGCTCTCAGGGGGAGGTCTGCCTGCCTCAACTTCGCAGACTCGGCGTGGCGCCTTCCGGTGCCGGAGACGACAGACGCAAGAGACATCCAGAAGGCTGCAGCGGAAGCTGCCGAGGCATTCCGCCCCGTGACGGAATCGGAGACTGGTGAAGTGAGGCGGGAGGGTGCTGTGGGGGTAAAGGGCCCGTCAGAGACGACCATGGTGGCGGAGGCGGCGGAAGAGCAAGAAGAAGAAGAAGGGGTGCCGGAGATTTGGAGGACCATGGCGTTGATGTCTCCAACGCATTACTGTGCGAGTGAGTATGGCGTTGATGACGTGGAATTTGATGATGCCGAAGTATCCTTGTGGAGTTATTCAATTTAA 660 0.5894 MFPINHIVNNQLASSSSDNTVLSSPLSEGEVVLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPETTDARDIQKAAAEAAEAFRPVTESETGEVRREGAVGVKGPSETTMVAEAAEEQEEEEGVPEIWRTMALMSPTHYCASEYGVDDVEFDDAEVSLWSYSI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03177 219 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Arst9g03177 219 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Arst9g03177 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 217 IPR045277 GO:0003700
Arst9g03177 219 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Arst9g03177 219 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Arst9g03177 219 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Arst9g03177 219 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Arst9g03177 219 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Arst9g03177 219 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Arst9g03177 219 FunFam Ethylene-responsive transcription factor 2 53 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03177 Arst-Chr9 109308994 109310252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03177 24 217 AP2-EREBP Transcription Factor Family AT4G25470 59.113 2.05e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Arst9g03177 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03177 - - gmx:100101894 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04185 5 103951180 103952179 Arst9g03177 9 109308994 109310252 ECH
Arst9g03177 9 109308994 109310252 Arst9g03177 9 109308994 109310252 ECH
Arst5g04185 5 103951180 103952179 Arst9g03177 9 109308994 109310252 PCT