Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03168 ATGAGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTTAAGCGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTATTGAATTTGGTCGGAAGGGGCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCGTTAGAAGACCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTTATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGTAAGATAACCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGGGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGATGACAGGCGAGGTGGACATAGTCCTGGGAGAGGTCATGATCGTCAGCGTGACAGGAGCCGTGATGGAAGGCGGTCACCCAGTCCATATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAAAGGGGCAGTCCTGACTATGGCCGAGGCCGCAGCCGTAGTCGTAGCCATAGTCCCCTTCGAAGAGAGCAGCAAGTTAGTCCTGTTTATGGGCGTAGAAGCGCTAGTCCATATGGAAGACAGAGGGATGGCCCTGATCCTTCCCGTGGGTCTAGCCAAAGCCCTTACCACAAAGAGCGTGGGAGAGCTGACCATGGAATCTCTCCTTCCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGGTCCTAGTCAAAGTCCTTATGATACTCAGAAGGCTAGCCCTGTAAATGGCCACGAGACCAGGGATAGTCCCGATGGAAAAGGGAACCCTAGCCCTTACAATGGTTATAAAGGAAGCCCAAACACGGGGCTTGAACCAAGGGATAGCCCCAACTATAGTGGTCCTGAAAGTCCCATGCATGAAGCATATCACAGTCAGTCACCCCCTGCAGAAGAATGA 1116 0.491 MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRRLRVEWTKHERGVRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGHSPGRGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSHSPLRREQQVSPVYGRRSASPYGRQRDGPDPSRGSSQSPYHKERGRADHGISPSHSPDGRETSPQNGRGPSQSPYDTQKASPVNGHETRDSPDGKGNPSPYNGYKGSPNTGLEPRDSPNYSGPESPMHEAYHSQSPPAEE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03168 371 MobiDBLite consensus disorder prediction 167 371 - -
Arst9g03168 371 MobiDBLite consensus disorder prediction 287 316 - -
Arst9g03168 371 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
Arst9g03168 371 SMART rrm1_1 95 161 IPR000504 GO:0003723
Arst9g03168 371 SMART rrm1_1 3 70 IPR000504 GO:0003723
Arst9g03168 371 Gene3D - 86 197 IPR012677 -
Arst9g03168 371 Gene3D - 1 85 IPR012677 -
Arst9g03168 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 165 IPR000504 GO:0003723
Arst9g03168 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Arst9g03168 371 MobiDBLite consensus disorder prediction 268 286 - -
Arst9g03168 371 FunFam Serine/arginine-rich splicing factor RS31 86 176 - -
Arst9g03168 371 Coils Coil 369 371 - -
Arst9g03168 371 MobiDBLite consensus disorder prediction 333 347 - -
Arst9g03168 371 CDD RRM1_AtRSp31_like 2 73 - -
Arst9g03168 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Arst9g03168 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Arst9g03168 371 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 95 293 - -
Arst9g03168 371 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Arst9g03168 371 SUPERFAMILY RNA-binding domain, RBD 76 172 IPR035979 GO:0003676
Arst9g03168 371 MobiDBLite consensus disorder prediction 167 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03168 Arst-Chr9 109186428 109190426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03168 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.044 3.88e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03168 K12893 - gmx:100796509 585.104