Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03137 GATGATCCACACAAGGAATCAGCTGAGGAACTGGAGGAAGATGTACAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCAAGAGGAAGAATCAGCTGAGGAACTGGAGGAAGATGTACAGGAGGAATCAGCCAAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGTTGAAGAAGTAGAGGAAGATGTACAGGAGGAATCAGCCAAGGAACTGGAGGAAGATCCTGAGGAGGAATCAGTTGAAGAAGTAGAGGAAGATGTACAGGAGGAATCAGCCGAGGAACTGGAGGAAGATCCCGAGGAGGAATCAGCTGAGGAACTGGAAAAAGATCCAGAGGAGGAATCAACTGAGGAACTAGAGGAAGATCCTGAAGAGGATCTAGTAGTAAACATCAAGTGGGAGGGTGCATCATGTAATGAAGTTCCATTATTATCCCAGGCATCGTATCAATCACCGAAGAAATGCAAGCAGGAGGGAATGCAAAGCCAAAATTTAGAACCAGAAGCTTCTCGACTGGAACTCAGTAGTGACAAGTCAATTTCTGTGGCAACTACCGATAAAGTTGGTTCCAAAGAAGAAGTTTCAGGAAGGTCGGCAAAACAAAGGCGTAGTAGATGGGAACCACAACCTCGTGGAGATGGAACGAATGATGATCTGACTTGCAAAAGGAGGAAAACCAGGTGGTCTAGTGAAGAAACTCAAATGAAAATGCTGGGTCCACTTCAGCTTCCTAACTTAAATATCATATCTAAGTTGATGACATTAAACCCAGATTTTAACCCTCCTCCTGAATACAAGCCCCCAAAGCTCTTCAAAAAGCTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTCATTGGACTTATTATTGGTCCTCGTGGAAACACACAGAAGAAGATGGAAAAAGAATCTGGGGCTACAATTCTTCTAAGAGGTAAAGGCTCCTCAAAAGCAACTAGCAAATGTGACTCTGAGGAAGAAGATTTACATGTTTTAATAGAAGCTGACAACCAAAAATCACTGGATGCAGCAGTTGGCATGGTTGAAAAACTGCTAATTCCAGTTGAAGAAGGACAAAATGAGCACAAGCGAGAACAGTTAAAGGAGCTGGCTCAACTGAAAGCAACACGGAGAGATGAAAATGTGTGCAGTGTGTGTGGTGATAAGGGACACAGACATTATGCATGCCCTAACCTTAGTTCAACTTTTAATTTCGATTTATTTGACACTGGTTGTAGCAGCAGCATTTCAATCCCAACTTATCCTGCTACTGCATTGTTTCCACCAAACAGTAACTTTCCATGCGGATCTGGAACTAGTCTTAATTCAGTGCAGAATAGACAAATAAGGCCTGGAAAGGAAATAAACGACAAAAACCTTTATGTTGGTTATTTGCCGCCATCAATTGACAATAATAGATTGACTGAGCTGTTCTCCCCATTTGGTAAGATCACTGAAGCTGATGTTATTAAGGATCGAACCACTGGCATCAGTAAAGGTTATGGCTTTGTCAAATTTGAAGATTCCCAGGATGCAGCTTTAGCTATAACGCATCTAAATGGTTTCAGAATTGATGGAAAGTTTTTGAAAGTGAGGATAGCCGGACTGCAGGCAAATAATGAAACCCCAAGTCTAAACCCTATTCCTCAGATACCATTGCCTGCAACTGTCTCCACAAATGTCATTCACCAAACGAATCTTTCTGATCCATTACATTTCATGCTGCCAGAATACCAATCTTCATTTCATGACAGCAGTAGCACAAATATGTTTTCATGTAATATCAACTCAGAGGATGGTGATCCTCTGAAGGTAAATGCTTTGCCCTTTACTCCTCCAAGAAACACTTTGATCACTCCCCATCCAGGTTATTCTGGCAACTTTTCAGATCAAAGTTTGTTCTCATCAAAAGATTCAACCGAACATTTTCCTGGTGATCCAGGCAATCTTGGTAATTTCAGTCCTTTCTTATGA 2013 0.4208 DDPHKESAEELEEDVQEESAEELEEDPEEESAEELEEDQEEESAEELEEDVQEESAKELEEDPEEESVEEVEEDVQEESAKELEEDPEEESVEEVEEDVQEESAEELEEDPEEESAEELEKDPEEESTEELEEDPEEDLVVNIKWEGASCNEVPLLSQASYQSPKKCKQEGMQSQNLEPEASRLELSSDKSISVATTDKVGSKEEVSGRSAKQRRSRWEPQPRGDGTNDDLTCKRRKTRWSSEETQMKMLGPLQLPNLNIISKLMTLNPDFNPPPEYKPPKLFKKLYIPVKEYPEYNFIGLIIGPRGNTQKKMEKESGATILLRGKGSSKATSKCDSEEEDLHVLIEADNQKSLDAAVGMVEKLLIPVEEGQNEHKREQLKELAQLKATRRDENVCSVCGDKGHRHYACPNLSSTFNFDLFDTGCSSSISIPTYPATALFPPNSNFPCGSGTSLNSVQNRQIRPGKEINDKNLYVGYLPPSIDNNRLTELFSPFGKITEADVIKDRTTGISKGYGFVKFEDSQDAALAITHLNGFRIDGKFLKVRIAGLQANNETPSLNPIPQIPLPATVSTNVIHQTNLSDPLHFMLPEYQSSFHDSSSTNMFSCNINSEDGDPLKVNALPFTPPRNTLITPHPGYSGNFSDQSLFSSKDSTEHFPGDPGNLGNFSPFL 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03137 670 MobiDBLite consensus disorder prediction 1 143 - -
Arst9g03137 670 SUPERFAMILY RNA-binding domain, RBD 461 547 IPR035979 GO:0003676
Arst9g03137 670 Gene3D - 450 555 IPR012677 -
Arst9g03137 670 Pfam KH domain 297 362 IPR004088 GO:0003723
Arst9g03137 670 Coils Coil 5 25 - -
Arst9g03137 670 ProSiteProfiles Type-1 KH domain profile. 297 361 - -
Arst9g03137 670 Gene3D K Homology domain, type 1 236 397 IPR036612 GO:0003723
Arst9g03137 670 SMART kh_6 282 366 IPR004087 GO:0003676
Arst9g03137 670 Coils Coil 29 57 - -
Arst9g03137 670 MobiDBLite consensus disorder prediction 648 670 - -
Arst9g03137 670 PANTHER RNA-BINDING PROTEIN RELATED 106 556 IPR045071 -
Arst9g03137 670 MobiDBLite consensus disorder prediction 161 242 - -
Arst9g03137 670 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 282 399 IPR036612 GO:0003723
Arst9g03137 670 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 549 IPR000504 GO:0003723
Arst9g03137 670 MobiDBLite consensus disorder prediction 161 200 - -
Arst9g03137 670 MobiDBLite consensus disorder prediction 1 139 - -
Arst9g03137 670 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 543 IPR000504 GO:0003723
Arst9g03137 670 SMART rrm1_1 472 545 IPR000504 GO:0003723
Arst9g03137 670 CDD KH-I_BBP 281 366 - -
Arst9g03137 670 MobiDBLite consensus disorder prediction 202 242 - -
Arst9g03137 670 FunFam Sex lethal, isoform D 453 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03137 Arst-Chr9 109004054 109006281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03137 395 547 Eukaryotic Initiation Factors Gene Family AT3G11400 33.962 1.55e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03137 K13095 - qsa:O6P43_008235 481.87