Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03113 ATGCCACCATTGGAAATTTTGGATAGATATTGTGTAATAAAGGAAAGGATGACACAAGCGCTTCGATACTACAAAGAGTTGACAGAACAGAATGTTCTGGCGCAGGTTTGGGCACCTGTTAGAAATGGTAATAGGTTTGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCACCAGTATCGAACGGTGTCCCTGATGTATGTGTTTTCGGCGGATGGAGAGAAAGAAGAAAGTCTTGGACTTCCTGGTCGAGTTTATCAGCAAAAAGTACCAGAATGGACACCTGATGTTCAGTATTATTCTACTAAGGAGTATCCTCGCAGAGATCATGCACAACATTACAATGTCCGCGGTACCTTGGCTTTGCCTGTCTTTGAACCTTCAATGCAGTCTTGTGTAGGTGTGTTGGAGTTGATCATGACTTCACAGAAGATTAACTATGCTCCTGAAGTTGACAAAATTTGCAGAGCCCTTGAGGCAGTGAATTTGAAGAGTTCAGAAATTTTAGGCCACCAATACACTCAGATTTGTAATGAAGGCCGCCAGAATGCGCTAGCAGAGATCTTGGAGATATTGACAGTGGTTTGCGAAACTCACAATTTACCTTTGGCGCAAACATGGGTTCCATGTAGGCATCGGAGTGTTCTGGCCCATGGAGGTGGCCTAAAGAAAAGTTGTTCAAGTTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGATATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTCCGAGAGGCCTGTGTCGAACATCACTTACAGCAAGGTCAAGGGGTTGCTGGCAGGGCTTTTTCTTCACATAGCATGAGCTTCTGTAGGAACATTACCCGATTCTGCAAAATTGATTACCCTTTAGTTCATTACGCTCTCATGTTTGGGTTAACTAGCTCCTTTTCAATCTGTTTGCGAAGCTCGCACACCGGAGATGATGACTATGTATTAGAGTTTTTTCTGCCACCTAGGATCACAGACTTTAACGAACAGAAGGCTTTGTTGGGATCCATATTGACAATAATGAAACAACATTTCCAGAGCCTTAAGATTGCTTCTGGTGTTGAACTTGAACAGAATGCTTTGGTTGAAACTATTGAAGCAACAATTGAAGGAGTTCATCTGAGGTTTGAATCTATTCCAGTTAGACAGGATGCTTCACCAAACGTGAGGGAGGAATTGGCACAAGATCCGTCGTTGCAGAAAATAATGATGGGCTGCAATGATGGAGGGAGTATTGGTGATCAGATACCCTCCTTAGAAACCAAAAACACAAATAAGCCATCAGAGAGGAAACGTGGGAAAACTGAGAAATCAATAAGTCTTGAAGTTCTGCAACGTTATTTTGCTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGCAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAACAAAGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCAGTCCAAGGTGCCGAAGGAGCATTCGCTTTGAATCCTCTGAGCACAAGTCCTCTTCCCTTTCCTGAGCATTCTACTCCAAACAAGTTCAGCCAGCAAGCCTCTCCAACTGAACCTCAGATAAGAGAAAATGAATTAGATGCCTCTAAAGTTTTAGAAACAACCAGAATTGCCAGAGCACAGTGTCTCGAGAAAATGGTTAATGATAAAAGCGGTTCTATTCGGGAGGTAGGGAAGGAAACAAAGGGGCCTAGAGCAAAGAGTTGCTCTAGTGCAGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGGTAGCCCTCCTATCGAAAGCTCGCCCGTAAAAGATATATTCATTACATCAAACAATGATCAATGTGTTGGTCTAAGGTCACCAGAGGCAACAATGCAGCCGCCGAATAATACACTGAGCTACCCAACGACTTGCACTATGCCTGATATGGTGGCAACAGAACTTCAAGAGCCATTCGGAGGAATGCTGGTAGAAGATGCCGGAAGTTCCAAAGACTTGAGAAACCTATGTCCTTCTGTAGCTGAGGCAATTGTGGAGGACATGGCCCCGGAACCTTGCCGGACTAATCCTCCATTTTCTGGGTTGGCTCCCAAGCAATGCATGGATCCCCTTAAGGAGACAGTGACACCTTTTGCAGCTAGAATAGAAATGAAGACTGTCACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTTTCTTTGAATTGTGGAATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGGTTGAAACTAGAAGTAGGTACTTTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCATGTGATGCAGATCTACAAGAGTGCATAGATGTTTCAAGATCATCAGCAAGTAACATAATAAGAGTTTTGGTGCATGAAATAACTTCCAATCTTGGAAGCTCATGCGAGAGCTCAGGGTAG 2520 0.4321 MPPLEILDRYCVIKERMTQALRYYKELTEQNVLAQVWAPVRNGNRFVLTTSGQPFVLDPHSNGLHQYRTVSLMYVFSADGEKEESLGLPGRVYQQKVPEWTPDVQYYSTKEYPRRDHAQHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICRALEAVNLKSSEILGHQYTQICNEGRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQGQGVAGRAFSSHSMSFCRNITRFCKIDYPLVHYALMFGLTSSFSICLRSSHTGDDDYVLEFFLPPRITDFNEQKALLGSILTIMKQHFQSLKIASGVELEQNALVETIEATIEGVHLRFESIPVRQDASPNVREELAQDPSLQKIMMGCNDGGSIGDQIPSLETKNTNKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFALNPLSTSPLPFPEHSTPNKFSQQASPTEPQIRENELDASKVLETTRIARAQCLEKMVNDKSGSIREVGKETKGPRAKSCSSADSTNPTSHGSCHGSPPIESSPVKDIFITSNNDQCVGLRSPEATMQPPNNTLSYPTTCTMPDMVATELQEPFGGMLVEDAGSSKDLRNLCPSVAEAIVEDMAPEPCRTNPPFSGLAPKQCMDPLKETVTPFAARIEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECIDVSRSSASNIIRVLVHEITSNLGSSCESSG 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03113 839 CDD PB1_NLP 746 826 IPR034891 -
Arst9g03113 839 FunFam RWP-RK domain-containing protein 742 826 - -
Arst9g03113 839 Pfam RWP-RK domain 455 503 IPR003035 -
Arst9g03113 839 MobiDBLite consensus disorder prediction 533 557 - -
Arst9g03113 839 ProSiteProfiles RWP-RK domain profile. 442 523 IPR003035 -
Arst9g03113 839 Pfam PB1 domain 745 826 IPR000270 GO:0005515
Arst9g03113 839 MobiDBLite consensus disorder prediction 429 453 - -
Arst9g03113 839 ProSiteProfiles PB1 domain profile. 745 827 IPR000270 GO:0005515
Arst9g03113 839 PANTHER PROTEIN NLP8 13 839 IPR045012 GO:0003700
Arst9g03113 839 MobiDBLite consensus disorder prediction 531 558 - -
Arst9g03113 839 PANTHER PROTEIN NLP8 13 839 IPR045012 GO:0003700
Arst9g03113 839 MobiDBLite consensus disorder prediction 602 621 - -
Arst9g03113 839 SMART PB1_new 745 827 IPR000270 GO:0005515
Arst9g03113 839 Gene3D - 742 826 - -
Arst9g03113 839 SUPERFAMILY CAD & PB1 domains 742 830 - -
Arst9g03113 839 MobiDBLite consensus disorder prediction 586 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03113 Arst-Chr9 108676756 108680156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03113 147 839 NLP Transcription Factor Family AT4G24020 54.008 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Arst9g03113 PB1 7.9e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03113 - - aip:107618129 1684.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst5g04307 5 105012463 105016949 Arst9g03113 9 108676756 108680156 PCT