Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03072 ATGGCTTCTGATCTTCAAGCGAGGGCCAAAGAGGCATTCGTCGATGAAGACTATGATCTCGCGATGGACCTTCTCACTAAGGCCATTGCTTTTGAACCTAACAACGCTCAATACTATGCCGATCGTGCCCAAGCCAACATCAAACTCAACAACCTCGCTGAGGCTGTTGCTGATGCAAACATGGCAATTGAGTTGAATCCTTCTCTCCCAAAAGCATATTTGCGGAAAGGTACTGCATGCATGAAGCTTAAGGAATATCAGACAGCTAAGGCAGCTCTAGAGATGGGTGCTTCATTGGCTCCAGGAGATTCAAAATTCATTGATATGCTCAAACAATGTCATGAGCTCATTGCTGAATCTGATGTCACACCTATAATACCAGAAAAGCACACGACAACTCGGGATGTTTCTGCCAAAGAACTTGAGCAAAAGAATGACGTTTCACAGCAGATGACAGTAGCAGTTGCTAAACCTAAATACAGGCATGAATTCTACCAAAAACCTGATGAGGTGGTTGTTACCATTTTTGCAAAGGGCATTCCACGGGACAGCGTGACTGTTGATTTTGGTGAACAAATACTAAGTGTTAGAATCGATGTACCTGGTGAGGATGCATATGCTCTTCAACCTCGCTTGTTTGGAAAGATCGTACCTTCCAGATGCCGATATGAAGTTTTGTCTACCAAGATGGAAATCCGGCTTGCAAAAGCAGAACCTATCCACTGGGCAGCTCTTGAATTCCGTGGAGGTGCAACGGTTCCACAGAGGGCTATTGTTTCATCAGTTATCAACGTTCAAAGGCCTACTTACCCTTCCTCTAAACCAAAAAGAATAGATTGGGATAAGCTGGAAGCTCAAGTTAAGAAAGAGGAAAAAGATGAAAAGCTTGATGGTGACGCAGCGCTGAACAAATTCTTCCGCCAGATATATCAAGATGCAGATGAGGACACCAGAAGAGCAATGAGCAAATCATTTGTGGAGTCTAATGGAACCGTATTGTCCACAAACTGGAAAGAAGTGGGATCCAAGAAGGTTCAGGGAAGTGCTCCTGATGGCATGGAGTTGAAGAAATGGGAATATTAG 1083 0.4404 MASDLQARAKEAFVDEDYDLAMDLLTKAIAFEPNNAQYYADRAQANIKLNNLAEAVADANMAIELNPSLPKAYLRKGTACMKLKEYQTAKAALEMGASLAPGDSKFIDMLKQCHELIAESDVTPIIPEKHTTTRDVSAKELEQKNDVSQQMTVAVAKPKYRHEFYQKPDEVVVTIFAKGIPRDSVTVDFGEQILSVRIDVPGEDAYALQPRLFGKIVPSRCRYEVLSTKMEIRLAKAEPIHWAALEFRGGATVPQRAIVSSVINVQRPTYPSSKPKRIDWDKLEAQVKKEEKDEKLDGDAALNKFFRQIYQDADEDTRRAMSKSFVESNGTVLSTNWKEVGSKKVQGSAPDGMELKKWEY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03072 360 Gene3D - 158 247 IPR008978 -
Arst9g03072 360 Gene3D Tetratricopeptide repeat domain 1 155 IPR011990 GO:0005515
Arst9g03072 360 CDD p23_CS_SGT1_like 163 246 - -
Arst9g03072 360 Pfam Tetratricopeptide repeat 71 101 IPR019734 GO:0005515
Arst9g03072 360 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Arst9g03072 360 Pfam SGS domain 279 358 IPR007699 -
Arst9g03072 360 FunFam Protein SGT1 homolog A 158 249 - -
Arst9g03072 360 SUPERFAMILY TPR-like 5 121 IPR011990 GO:0005515
Arst9g03072 360 SUPERFAMILY HSP20-like chaperones 155 254 IPR008978 -
Arst9g03072 360 ProSiteProfiles SGS domain profile. 269 360 IPR007699 -
Arst9g03072 360 FunFam Protein SGT1 homolog 1 135 - -
Arst9g03072 360 ProSiteProfiles CS domain profile. 157 246 IPR007052 -
Arst9g03072 360 PANTHER PROTEIN SGT1 HOMOLOG 1 358 IPR044563 GO:0051087
Arst9g03072 360 Pfam CS domain 161 236 IPR007052 -
Arst9g03072 360 Coils Coil 42 62 - -
Arst9g03072 360 SMART tpr_5 70 103 IPR019734 GO:0005515
Arst9g03072 360 SMART tpr_5 36 69 IPR019734 GO:0005515
Arst9g03072 360 SMART tpr_5 2 35 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03072 Arst-Chr9 108230659 108233301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03072 1 101 U-box Gene Family AT3G07370 29.524 2.99e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03072 K12795 - gmx:100780174 540.806