Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03049 ATGATGGCGTTCTTCAGTGGAGCTCAACGATTTCTCCGCCAGTCTTCTTTTGTTGTGGCCTCCCACTTCACCTCTACTCGTTTCACTTCGACTCTTACTTCCCCAAAACTCTTCATCAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACTGAAGCGTTTTCTCCTTTCGGGCAGCTGCTTGAAGCAAAGGTTATAACCGATAGAGCCTCTGGACGATCAAAGGGATATGGATTTGTAACTTATGCGACCATAGAAGATGCTGAAAAGGCGAGAGCCGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCTCCTCAGCAGCCACAGTCTCAGCCCTCTGGAGCTGGTTTCACGGTTAACAAGACAATTGGATGGTGTGGTTGA 426 0.4624 MMAFFSGAQRFLRQSSFVVASHFTSTRFTSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRASGRSKGYGFVTYATIEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPQSQPSGAGFTVNKTIGWCG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03049 141 PANTHER NUCLEOLAR PROTEIN 8 25 140 - -
Arst9g03049 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Arst9g03049 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Arst9g03049 141 FunFam RNA binding protein 22 135 - -
Arst9g03049 141 SUPERFAMILY RNA-binding domain, RBD 34 135 IPR035979 GO:0003676
Arst9g03049 141 Gene3D - 24 135 IPR012677 -
Arst9g03049 141 MobiDBLite consensus disorder prediction 112 133 - -
Arst9g03049 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03049 Arst-Chr9 107909954 107911914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03049 24 97 Eukaryotic Initiation Factors Gene Family AT4G34110 32.432 3.20e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03049 - - gmx:100306326 190.274