Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g03013 ATGATTTCTTCTGGGCTCAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTGTTCGTGTGCACGAGGCTTGTCTGTGCTCGAATCCACTTGAATGCTTCAAGGAGATCCTTTCCCATTGCTTCCAGATCCAATCTTAGCATGATGGAACGGGGTTGGCATGGTCTTGAACGCACAGCTGTAGCTAAATTTCCAACAAAGAAGTTCAGTGACAAGTTCTTTTCGGCTGAAGAAAATTCTCAGTGTACAGTCTGCCTCTCGGAGTACCAAGGTGAAGATATTCTGCGTATCCTTCCCTACTGTGGACACTCATTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCCACTTGTCCAGTTTGTCGAATATCATTGCGGGAATTTACTGAGAGAAAGCGGTTAATGCAACCCTTATTCAGCTCTGCTTTACGACCTCATCGCAGCGCAGAATCCATTGAGAACCCCCATTATCTCTGTATGATGGGTGATAATGGGTTACCATTGAGAACCCCAGACAACCATGGGGCTAATGTGATGCAAGAGGACAGTTTTCCATCCGAGGGTGGTGGAGCAGATGCTACAGATAGCATCACCTGTCTTATTCCGGACGATCTTGTTAAAGATGAAGAGAAGAAGCATATAGAGAGCCCGTCAAACTTCTAG 684 0.462 MISSGLNLVMTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFPIASRSNLSMMERGWHGLERTAVAKFPTKKFSDKFFSAEENSQCTVCLSEYQGEDILRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFTERKRLMQPLFSSALRPHRSAESIENPHYLCMMGDNGLPLRTPDNHGANVMQEDSFPSEGGGADATDSITCLIPDDLVKDEEKKHIESPSNF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g03013 227 CDD RING-H2_EL5-like 86 129 - -
Arst9g03013 227 SMART ring_2 87 128 IPR001841 -
Arst9g03013 227 SUPERFAMILY RING/U-box 80 135 - -
Arst9g03013 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Arst9g03013 227 Pfam Ring finger domain 86 129 IPR001841 -
Arst9g03013 227 PANTHER OS11G0150450 PROTEIN 1 184 - -
Arst9g03013 227 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g03013 Arst-Chr9 107084783 107087335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g03013 13 132 C3H Transcription Factor Family AT4G10150 34.677 6.35e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g03013 - - gmx:100786109 389.808