Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02948 CTCACCTCCAATGTGAATCCCATCATTACCGATCTCACTATCATTGCTGGCCAGCAGAGGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGCATTGTGAAGAATTTTGGCCAGGAATATGTTAAATACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGACAGGTCCAGCCTAATCTACATTCTGTTCTGCAACGTCTCATTGGTACCTGGTCAAAGATCTTTCCTCCCTCTGTCCTAAGTAATATTGAAGCTCAATTGCAATCTTTACCAGCAATTAATAATCAACAACCCTTTGCTAATCACTTTGGGGAATATGATTTTCATGGACCGATTCTTGGAGCACATGTTATTAAACCACAATCCTTGCAGCAGATGGAACACTATAGTTCAATTATGGATATTGTTGGTGGTGATCGGTTGGACTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTCCAAACTTCCAAGACTTATAATCTCAATGATGAACAACGACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCGTGAAATTCCTAGTACTAAGCTTTTGTTTGTGGAGCAGCAGCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGCACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAGTAGAAACAGCAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACATTACCCGTTCAATATGGGGGCTGCTTCCCCTGCTTTCAATGCTCATGCTACTCGTCCTTCCGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGCTTGAACCAATAAACATTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTCTGTTTATACATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCATTTACATGGGGGAACCTTGCCACTTTACGTCCAAGCCTCCCAACTGCTCCATCACAAATGA 1263 0.422 MANGISHQPSPSMLVDQFNALLPRRQSYLKAFSTEEIVRTYGLLLSLLSELTSNVNPIITDLTIIAGQQRKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKYFSLRLPQVYCEAYRQVQPNLHSVLQRLIGTWSKIFPPSVLSNIEAQLQSLPAINNQQPFANHFGEYDFHGPILGAHVIKPQSLQQMEHYSSIMDIVGGDRLDSTGTVGNTREGGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQRRQSPRALIEAYGCDKGREIPSTKLLFVEQQPGRNGLGSKFPLASWQHTEEEEFDWKDMNPGLVDCSRNSSSMQSSVRFSRKRKLSNDLSNSSHYPFNMGAASPAFNAHATRPSGLNPAFPLQKRPRSLLEPININNNTNVGHGPNRTLFIHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGSSLHLHGGTLPLYVQASQLLHHK 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02948 470 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 36 439 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Arst9g02948 470 SMART 558neu5 43 161 IPR006569 -
Arst9g02948 470 FunFam polyadenylation and cleavage factor homolog 4 30 161 - -
Arst9g02948 470 ProSiteProfiles CID domain profile. 33 164 IPR006569 -
Arst9g02948 470 SUPERFAMILY ENTH/VHS domain 43 164 IPR008942 -
Arst9g02948 470 CDD CID_Pcf11 57 163 IPR047415 -
Arst9g02948 470 Gene3D - 30 162 IPR008942 -
Arst9g02948 470 MobiDBLite consensus disorder prediction 324 345 - -
Arst9g02948 470 Pfam CID domain 46 155 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02948 Arst-Chr9 105674102 105676795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02948 14 333 C2H2 Transcription Factor Family AT4G04885 40.997 2.80e-66 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02948 K14400 - aip:107640327 472.241