Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02871 ATGTCCAATAATTCCACTTCTCAATCAAAAGATGGTTTTGATGCTAGTGGTTTCACATATGGCGTAGCATTCATACTAGGTTTGATCTTCTTACTTGCTACCATAGCTTTTGCATGTTTCCGCATTCGCAGAATTCGAATTCCTAACATATTTAACATAGTAGCCGGTGTTCCTCCATCGTCACAATCTCATCAAACATTGGAACACCACGTGGATATTCGTATCGACACGAGTTATGAGAATTACCCTAAGATGCCATATTCCGATGAGGTAAAGAACAAAAATAGTGTTGTGGGTGGATGCACCATATGCTTAGGAGACTATAAAGAGAGTGAGATGTTGAGGGTTCTTCCTGGTTGTGGCCATGCCTTTCACCAACCTTGTGTTGATCCATGGCTCATGTTGCACTCCACATGTCCCATATGCCGAAAATCATTGCCTACTCAAGCTCCATAG 456 0.4189 MSNNSTSQSKDGFDASGFTYGVAFILGLIFLLATIAFACFRIRRIRIPNIFNIVAGVPPSSQSHQTLEHHVDIRIDTSYENYPKMPYSDEVKNKNSVVGGCTICLGDYKESEMLRVLPGCGHAFHQPCVDPWLMLHSTCPICRKSLPTQAP 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02871 151 SMART ring_2 101 142 IPR001841 -
Arst9g02871 151 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 146 IPR045899 -
Arst9g02871 151 CDD RING-H2_PA-TM-RING 101 143 - -
Arst9g02871 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 149 IPR013083 -
Arst9g02871 151 Pfam Ring finger domain 101 143 IPR001841 -
Arst9g02871 151 SUPERFAMILY RING/U-box 82 149 - -
Arst9g02871 151 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02871 Arst-Chr9 104250697 104251651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02871 17 150 C3H Transcription Factor Family AT5G06490 31.646 1.56e-24 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02871 - - aip:107616940 238.81