Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02854 ATGGACCAAAAGGATATTGTTAGAATCTTGACAACAACCATCGATAGTTTCATTCAGGATCGATTAATCGACAAAGAACTAAGAGCTCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTCTGAAAAAGACACTGAGGTAGAGTACTCTGATCAAGCAGTGTTAGCAAATCTTGATTGGGGTATCGAGGCACTTGAAGAAGCTATCAATACCTATAACACGGAAACTAAGCTTGCGAGACTCGATTATGCTGAGAAGATGCTGCAAGTTTGTGCAATGCTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTTCTACCTTTCAGCTTGGGCACATTTGAACCTATCATACCTATGGAAGTTGAGGAACAACATTCAGAATTGTGTTCTTCATGCCATTGACATGTTCATCGTTGATCCTTTTTTCGCTCGGATTGACTTTGCTCCAGAACTCTGGAAAACTCTCTTCCTTCCACACACGAGCTCTATTGTAGGGTGGTATTCAGAGGAGAGGCACAAACTTATGATGGAAGTAATACCTGAAACTTCTGATTTTTCAGTCACAGCTGATTTTGATCAACTTTTCAATGAATCCTTGGTATTCTCTCTGAGGCCAAATCAGTTAGATAAGTTGCAAAAACTGGAGCAGCTTTATGGAGAGTCTTTGGACGAGAACACGCGGCTATATGCAAAGTACTATAAGGACTGCATGAACTCTGATTCCACTACCTCAGGCAAGAAGGTTGTTCCCATGTTGCCAATTGCTGAGCCGCCAATGACTCCTTTGCATGAGTTGAGCAGGTCGGTTCCAGATTATGTGAAATTCGGTCCGATTTTGCCTAAGAGTGCTGGCTTTTCTTTGATGTCAATGCCAAAAGATGGTGTAAATGAAAAAACCAGAGATAAACCATCGAGCCATTCCAAGGTGGAAAACTCATCTATATGGGGTACTAAGGAGAGCATCATTGAAGAGAATGAAAATGAAAATGAAAATGAAGAAGATTCAGATTCTGATCTTGATGATGCATCTGTGGGTTCTCCTAACAAAAATAATGTTTTCTCGCCTGAAAGGAAGGCGATCAAGGACAATAATATTGAGCCAAAAGTGCATCTATCAAACCAAAGGAGTAAAATATACTCTCCTAGTATCTCCTCTCCCTTGGACTCTCCAAGAACTCCTCAAGACAAGTCGTCATTAAATCCTCATATGCGCAGCAAAAGAGAGCCGAAGTACTTGTGCTTATTGTCTAGTCGTTTAAGGGATTCGATCATTTCTGACTCTTTAACATCATCACCAGACCTGAGCACTGATCACATTATGAACTCTGATCATGAAATGATGGTGAACATTAAGAAGAAAGACTATAATCGAATTCCATGTATGAGTTATGAAAATGAGGATAGCCTGGTGCTAAATGACAGTTCTTTTTGTGAAAGTGATGAGGGATATCATGGCTGCATTTCATTGCCCAAAATAGAGAAGCAGACTACCGGATCAAAGCCGCCAAAAGATTTTGTATGTCCAATCACAGGTCAGATATTTTGTGATCCTGTTACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCTATTCAAGAATGGCTTAAAACAGGAAACACAACATGCCCCATCACGCGACAGCCTCTATCCGCAAGCATGTTACCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCCTGGAAGGAACAACATCCTGAACTAGCTCAGGAGTTCTCAAATTCTAACACTAACACACCAAGGGGTTCTTCTTGTTCTCCATTGCAGAAAGACAACTCAATGCTGTCCATTTTACAAAGAACACCCGACTCAATGACTCATAAGAACAAAGCGGATTATATCATACAAAGGAGCAAGAGATTTATACAGGTTGCTGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTTGAAACAATCATGAATTCCATGAAACCATACATTTCAAGTCTCTGCACATCAGAAAATTTACAAGAATGTGAAGAAGCTGTATTGGAAATTGCTAGATCATGGAAGGATGCAAAGAGTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAACGGTTTAATGGAAATACTTTCAGCTTCTCTGAATGGAGAAGTTCTGAGGACAACAATTTACATCCTTACAGAGCTAATTTTTCTAGACGAAAGTGTCGGAGAGATACTTAACAGTGTAGATTCTGATTTTGATTGTTTGGCTGCTCTGCTCAAGAATGGTTTGGCTGAGGCAGCACTTCTGATTTATCAGCTAAGACCAGTTTTTGCTCAGCTATCAGCCCATGAGCTTATACCATCTCTAGTCCAAGTGATTCAGAACAAAAATGAGGAGTTGGATGATTTTCAATTAGTTATGGACCCGAAAGATGCCGCCATAGCAATTCTTGAACAAATATTAGCCGGAGGGGATGAATACAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCGGCATTGGTAAAATATTTCGAGAGGATGGAGGTAAGGACGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAGAAGTTGCAAGAACTTGATAGCAAGTCGAGTCGAATTGTCTCCTGTTCTTGAATTATTTCATGGTGGAAATGATAGTGTGAAAGGCGTCTGCGCAGAATTTCTCTCCGAGCTGGTTCAATTGAATAGGAGAACTTTCTGCAACCAAATCTTACAGATAATCAAGGATGAAGGAGCATTTAGTACAATGCATACGTTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAGCTTGCTGTTGCCAGTCTTCTTCTCCAGCTTGATCTTCTGGTGGAGCCACGAAAGATGAGCATTTATAGGGAAGAAGCTGTAGAGACACTAATTGAAGCACTTTGGCAAAAAGACTTCTCAAATACTCAAATTAAGGCTTTAGATGCTTTACTATATCTTATTGGACATGTCACTTCCTCAGGAAAGTCATATACTGAAGCCTGGTTGCTCAAGATCGCAGGATTCGATCAGCCTTACAACGCTTTAATGAAGGCCGAACAATTGGGACAACGTGACAATGATTTGGTGGAAACAATGGAGGATGAGAAAAATGCATTGAATTCTTGGCAGAAAAAGGTTGCATTTGTACTTTGCAACCATGAAAATGGTTCAATATTTAAAGCATTGGAAGAATGCTTAAGGAGTACTTCCCTAGAGATGGCAAAATCTTGCCTTGTTCTGGCAACATGGCTTACACACATGCTCTCTACGCTTCCTGACACCGGTATAAGGGACATTGCTCGTGAGTCATTGCTTGATGAATTCATAAATGTTCTACTGTCATCAAAGAACATGGAGGAAAAGATTCTTGCTAACCTAGCTTTGAATACTTTCATTAGTGATCCAATTGCTCATGAAGCACTTGGAGGCTATGCTAAAAGCATTTATAGGACCTTGAGGAAGCTAAAGAAACATTCAGCTGCAGCAGTTGATATTATGAGAACCTTACTAAACTTAAAATCTGTTGATGTGACTGAGTTGTGGAGTTGTAAAGAGGTTGTTGAGTTAGATTTGAGCTCAAACGGAGAAGTGCTTTCTTTGCTTTATCTGAATGGTCAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAATCATTCAAGAAACTCGCGAGCACACAAAAGCTGTAACTTCTCTGTGTTCTTCAGGTGATAGACTCTACAGTGGTTCCTTAGACAAAACCATCCGGGTTTGGACTATCAAAGCCAATGAGATTATATGTATAGATGTTCATGATGTGAAGGAGGCAGTGTATGAGTTAACAGCAAATGCTAGATTGGCATGCTATGTGTCTCAAGGAACTGGAGCCAAGGTTTATAATTGGTCAGAGGCTCCAAAGCATATCAATTTCAGCAAGTATGTGAAATGCCTTGCTGTTGCCGGCGACAAATTGTATTGCGGCTGCTCCGGTTACAGCATTCAGGAGGTTGACTTGTCCAAACATACATCATATTCATTCTTCTCTGGTACAAGAAAATTATTGGGAAAACAAACCATACACGCCCTTCAAATTCATGATGGTTTCCTCTATGCCTGTGGATCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCACTCTCCACCAAAATGGTAGTAGGATCACTATCGACTGGACTCGACATCCATCGTGTAGCCATCAACAATGACTTCATATTTGCAGGTACGAAGTTCGGCACCATTGAGGTTTGGCTGAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTAACACAAAAATCACATCATTAGTATCAGATGCGGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCCTTGGATTAA 4452 0.4061 MDQKDIVRILTTTIDSFIQDRLIDKELRAQHKEQCAERLAAEDGSSEKDTEVEYSDQAVLANLDWGIEALEEAINTYNTETKLARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNCVLHAIDMFIVDPFFARIDFAPELWKTLFLPHTSSIVGWYSEERHKLMMEVIPETSDFSVTADFDQLFNESLVFSLRPNQLDKLQKLEQLYGESLDENTRLYAKYYKDCMNSDSTTSGKKVVPMLPIAEPPMTPLHELSRSVPDYVKFGPILPKSAGFSLMSMPKDGVNEKTRDKPSSHSKVENSSIWGTKESIIEENENENENEEDSDSDLDDASVGSPNKNNVFSPERKAIKDNNIEPKVHLSNQRSKIYSPSISSPLDSPRTPQDKSSLNPHMRSKREPKYLCLLSSRLRDSIISDSLTSSPDLSTDHIMNSDHEMMVNIKKKDYNRIPCMSYENEDSLVLNDSSFCESDEGYHGCISLPKIEKQTTGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQPLSASMLPKTNYVLKRLITSWKEQHPELAQEFSNSNTNTPRGSSCSPLQKDNSMLSILQRTPDSMTHKNKADYIIQRSKRFIQVAATSPTSVLSQAAVETIMNSMKPYISSLCTSENLQECEEAVLEIARSWKDAKSDPQIHSYLSKPTVINGLMEILSASLNGEVLRTTIYILTELIFLDESVGEILNSVDSDFDCLAALLKNGLAEAALLIYQLRPVFAQLSAHELIPSLVQVIQNKNEELDDFQLVMDPKDAAIAILEQILAGGDEYSRSLNALSVISANGIPALVKYFERMEVRTSVVSILLCCMQAERSCKNLIASRVELSPVLELFHGGNDSVKGVCAEFLSELVQLNRRTFCNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQIKALDALLYLIGHVTSSGKSYTEAWLLKIAGFDQPYNALMKAEQLGQRDNDLVETMEDEKNALNSWQKKVAFVLCNHENGSIFKALEECLRSTSLEMAKSCLVLATWLTHMLSTLPDTGIRDIARESLLDEFINVLLSSKNMEEKILANLALNTFISDPIAHEALGGYAKSIYRTLRKLKKHSAAAVDIMRTLLNLKSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKVWDARKRIPRIIQETREHTKAVTSLCSSGDRLYSGSLDKTIRVWTIKANEIICIDVHDVKEAVYELTANARLACYVSQGTGAKVYNWSEAPKHINFSKYVKCLAVAGDKLYCGCSGYSIQEVDLSKHTSYSFFSGTRKLLGKQTIHALQIHDGFLYACGSSVDATAGKIFSLSTKMVVGSLSTGLDIHRVAINNDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLVSDADGMMLFVGSSDGKIQVWALD 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02854 1483 PRINTS G protein beta WD-40 repeat signature 1468 1482 IPR020472 -
Arst9g02854 1483 PRINTS G protein beta WD-40 repeat signature 1259 1273 IPR020472 -
Arst9g02854 1483 PRINTS G protein beta WD-40 repeat signature 1217 1231 IPR020472 -
Arst9g02854 1483 ProSiteProfiles U-box domain profile. 506 581 IPR003613 GO:0004842|GO:0016567
Arst9g02854 1483 Pfam U-box domain 508 578 IPR003613 GO:0004842|GO:0016567
Arst9g02854 1483 SMART Ubox_2 510 574 IPR003613 GO:0004842|GO:0016567
Arst9g02854 1483 MobiDBLite consensus disorder prediction 373 405 - -
Arst9g02854 1483 Pfam WD domain, G-beta repeat 1214 1230 IPR001680 GO:0005515
Arst9g02854 1483 Pfam WD domain, G-beta repeat 1241 1271 IPR001680 GO:0005515
Arst9g02854 1483 SUPERFAMILY ARM repeat 660 1144 IPR016024 -
Arst9g02854 1483 SMART WD40_4 1235 1272 IPR001680 GO:0005515
Arst9g02854 1483 SMART WD40_4 1440 1481 IPR001680 GO:0005515
Arst9g02854 1483 SMART WD40_4 1192 1230 IPR001680 GO:0005515
Arst9g02854 1483 SUPERFAMILY WD40 repeat-like 1215 1482 IPR036322 GO:0005515
Arst9g02854 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1242 1277 - -
Arst9g02854 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1482 - -
Arst9g02854 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1482 - -
Arst9g02854 1483 SUPERFAMILY RING/U-box 505 579 - -
Arst9g02854 1483 Gene3D - 1175 1483 IPR015943 GO:0005515
Arst9g02854 1483 MobiDBLite consensus disorder prediction 331 346 - -
Arst9g02854 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1242 1281 IPR001680 GO:0005515
Arst9g02854 1483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 591 IPR013083 -
Arst9g02854 1483 MobiDBLite consensus disorder prediction 581 602 - -
Arst9g02854 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1449 1483 IPR001680 GO:0005515
Arst9g02854 1483 CDD RING-Ubox_PUB 508 560 IPR045210 -
Arst9g02854 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1217 1230 IPR001680 GO:0005515
Arst9g02854 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1449 1483 - -
Arst9g02854 1483 MobiDBLite consensus disorder prediction 292 410 - -
Arst9g02854 1483 Gene3D - 655 934 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02854 Arst-Chr9 104115523 104124317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02854 508 624 U-box Gene Family AT3G54850 40.336 2.18e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02854 - - gmx:100776142 2395.54