Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02760 ATGGACGCCGACGCCGACCTTCAGGAACACGATGACGACCATGACAACAACCACCATGCCTCCTCTCACGCTAACAAGCAGGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAAGCTAGCGCCCTACGTGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCAACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTTCAACAGCATTTTCAGTCGTGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGATTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGACGACCTGGGGGTTTCCGATCCAGGAGGCCTTTCATGCCTGCTCCATTCTATCCACCATATGGTTATGGAAGGGTCCCAAGGTTTAGAAGACCTACTCGATACAGGCCATACTAG 612 0.4673 MDADADLQEHDDDHDNNHHASSHANKQDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGGFRSRRPFMPAPFYPPYGYGRVPRFRRPTRYRPY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02760 203 CDD RRM_II_PABPs 80 151 - -
Arst9g02760 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 155 IPR000504 GO:0003723
Arst9g02760 203 FunFam Polyadenylate-binding protein 1 73 159 - -
Arst9g02760 203 Gene3D - 13 152 IPR012677 -
Arst9g02760 203 Coils Coil 22 56 - -
Arst9g02760 203 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 178 - -
Arst9g02760 203 MobiDBLite consensus disorder prediction 10 55 - -
Arst9g02760 203 SMART rrm1_1 80 151 IPR000504 GO:0003723
Arst9g02760 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Arst9g02760 203 SUPERFAMILY RNA-binding domain, RBD 69 176 IPR035979 GO:0003676
Arst9g02760 203 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02760 Arst-Chr9 102442350 102446347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02760 80 151 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 5.49e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02760 K14396 - gmx:100527545 310.842