Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02759 ATGGACGCCGACGCCGACCTTCAGGAACACGATGACGACCATGACAACAACCACCATGCCTCCTCTCACGCTAACAAGGACTTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAAGCTAGCGCCCTACGTGAAATGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATTCAACTGGATCTTCTGCAAGTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTTCAACAGCATTTTCAGTCGTGTGGAACTGTGAACAGAGTTACAATATTGACAGACAAATTTGGGCAGCCAAAAGGATTTGCTTATGTAGAGTTCGTTGAGATAGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGGATGAAACAGTATTTTGGAAGACGACCTGGGGGTTTCCGATCCAGGAGGCCTTTCATGCCTGCTCCATTCTATCCACCATATGGTTATGGAAGGGTCCCAAGGTTTAGAAGACCTACTCGATACAGGCCATACTAG 609 0.4663 MDADADLQEHDDDHDNNHHASSHANKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSTGSSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPGGFRSRRPFMPAPFYPPYGYGRVPRFRRPTRYRPY 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02759 202 SMART rrm1_1 79 150 IPR000504 GO:0003723
Arst9g02759 202 MobiDBLite consensus disorder prediction 10 54 - -
Arst9g02759 202 FunFam Polyadenylate-binding protein 1 72 158 - -
Arst9g02759 202 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 15 177 - -
Arst9g02759 202 SUPERFAMILY RNA-binding domain, RBD 68 175 IPR035979 GO:0003676
Arst9g02759 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 154 IPR000504 GO:0003723
Arst9g02759 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 148 IPR000504 GO:0003723
Arst9g02759 202 MobiDBLite consensus disorder prediction 1 75 - -
Arst9g02759 202 Gene3D - 12 151 IPR012677 -
Arst9g02759 202 CDD RRM_II_PABPs 79 150 - -
Arst9g02759 202 Coils Coil 21 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02759 Arst-Chr9 102442350 102446347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02759 79 150 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 5.28e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02759 K14396 - gmx:100527545 315.464