Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst9g02628 ATGGATCTTGTAATGAGAAGACACATGATTTATGTGTCATTGTCAGAATCAGAATCTATTTCTCCAAATCCAGGGACTGATCATGCGCATTCATCTTCAGGAACAAGCTTTCCAATCATAGCAATTGCCATAATAGGAATAATGGCCACAGCATTCTTGCTAGTAAGCTACTACATCTTTGTCATCAAATGCTGCCTCAATTGGCACCGAATCGATATCTTGCGGCGGTTCTCTCCTTCCAGAAGGCGCGGCGGCGGCAGCGACGATCCAGCCTTAGCAGTATACTCAAGCGGAATACAAGCAGAGCCTCGGGGGCTGGACGAGGCGGTTATAAGGCTAATTCCGGTGATTGGGTACAAGAATTCGCAGCACAGCAGCTGCGAATGCGCGGTTTGCTTGAATGAATTTCAAGAACATGACAAGCTAAGGATTATTCCAAATTGTAGCCATGTTTTTCACATTGATTGCATTGATGTTTGGCTTCAGAACAATGCAAATTGCCCTCTTTGTAGGACAAGCATTTCATTAACAAGTAGGTTCAGCATTCATCAGCTTCTAACTCCTCCAACAATTTCTTCTTCTTCTCCTCCTTCTTCTTCTTCTTCTTCATCTTCATCACCACAACAATTGATTGAAGATGAAGACTTTGTTGTTATTGAATTGGGTGATGAGCGTGTTCGTGGTTTGGAATCATCACCATTACCAAGAACATGTTCTGTTGTTAGTTCTTCACCAAGGAAGAAAGGAATGAAGCTGAAGAAAGTGACAAGCATGGGGGATGAGTGCATTGACATGAGAGGCAATAAAGATGAGAACTTTTCAGTGCAACCAATCAGAAGATCTTTCTCTATGGATTCTTCAGGGGATAGGAAGTTCTATTTGGCAGTTCAAGAAGCTTTGAAGCAGCAACAACAACAGCAGCAGCAGCAGCACAACAACACCATTGAAGGCTGCAGTGGTGGAAGTGCAAGTGGAAGAGCTAAGAGATCATTCTTTTCATTTGGATATGGAAGTGGCAGATCCAGAAGTTCCGTGCTACCTGTTCTTTTGGACTCTTAA 1059 0.4306 MDLVMRRHMIYVSLSESESISPNPGTDHAHSSSGTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDILRRFSPSRRRGGGSDDPALAVYSSGIQAEPRGLDEAVIRLIPVIGYKNSQHSSCECAVCLNEFQEHDKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFSIHQLLTPPTISSSSPPSSSSSSSSSPQQLIEDEDFVVIELGDERVRGLESSPLPRTCSVVSSSPRKKGMKLKKVTSMGDECIDMRGNKDENFSVQPIRRSFSMDSSGDRKFYLAVQEALKQQQQQQQQQHNNTIEGCSGGSASGRAKRSFFSFGYGSGRSRSSVLPVLLDS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst9g02628 352 CDD RING-H2_EL5-like 128 171 - -
Arst9g02628 352 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Arst9g02628 352 FunFam E3 ubiquitin-protein ligase ATL6 95 177 - -
Arst9g02628 352 SUPERFAMILY RING/U-box 120 177 - -
Arst9g02628 352 MobiDBLite consensus disorder prediction 188 209 - -
Arst9g02628 352 MobiDBLite consensus disorder prediction 303 324 - -
Arst9g02628 352 PANTHER RING-H2 FINGER PROTEIN ATL16 23 348 IPR044600 GO:0016567|GO:0016740
Arst9g02628 352 MobiDBLite consensus disorder prediction 303 320 - -
Arst9g02628 352 SMART ring_2 129 170 IPR001841 -
Arst9g02628 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 176 IPR013083 -
Arst9g02628 352 Pfam Ring finger domain 128 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst9g02628 Arst-Chr9 97805640 97807255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst9g02628 31 351 C3H Transcription Factor Family AT1G04360 50.000 2.82e-94 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst9g02628 - - gmx:100794749 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst9g02628 9 97805640 97807255 Arst9g02628 9 97805640 97807255 ECH